Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07990 1020 / 0 SIT4 phosphatase-associated family protein (.1) AT2G28360 949 / 0 SIT4 phosphatase-associated family protein (.1) AT3G45190 915 / 0 SIT4 phosphatase-associated family protein (.1) AT1G30470 730 / 0 SIT4 phosphatase-associated family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211500 [exp] 1387 / 0 AT1G07990 991 / 0.0 SIT4 phosphatase-associated family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037400 [exp] 1048 / 0 AT1G07990 976 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10021468 [exp] 922 / 0 AT3G45190 851 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10016088 [exp] 844 / 0 AT3G45190 840 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10023354 [exp] 727 / 0 AT1G30470 918 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10038452 [exp] 672 / 0 AT1G30470 842 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10016089 [exp] 77 / 2e-17 AT2G28360 80 / 1e-19 SIT4 phosphatase-associated family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04499 [poplar] [flax] SAPS SIT4 phosphatase-associated protein
Representative CDS sequence Show only first row Show all	>Potri.009G014700.1 pacid=42771776 polypeptide=Potri.009G014700.1.p locus=Potri.009G014700 ID=Potri.009G014700.1.v4.1 annot-version=v4.1 ATGTTCTGGAAGCTCACCACTCTCTCTACCTCTTCTCCTGTGGAGTCTGTATTAGACAAAGAAAATTTCACTTTGGAAGAGCTTCTGGATGAAGAAGAAA TAATCCAAGAATGCAAAGCCTTAAACACCCGACTCATTAATTTTCTGCGAGATAGAGCCCAGGTGGAGCAGTTGCTCAGATACATTATTGAGGAACCTTC AGAGGATGCTGAAAGTAAACGAACCTTCAAGTTCCCCTTCATTGCTTGTGAGATATTTACATGCGAAATTGATGTTATTCTTAAAACTTTAGTGGAAGAA GAGGAGTTGATGAACCTACTCTTCTCGTTCTTGGAACCAAATCGGTCTCATAGTGCCTTGCTTGCTGGGTATTTCAGCAAAGTTGTTGTTTGCCTTATGT TACGCAAGACAGTTTCACTTATGAACTATGTCCAAGCCCATCAAGATGTTTTCCGCCAACTTGTTGATTTAATTGGAATAACCTCCATCATGGAGGTTTT GGTCCGCCTGGTAGGAGCTGATGACCACGTTTATCCTAATTTTACTGATGTGATGCAATGGTTGGCTGATAGCAATTTGCTAGAAATGATCGTGGACAAA TTGAGTCCTTCTAATCCTCCTGAAGTTAATGCTAACGCAGCAGAAACATTATGTGCAATAACTCGAAATGCTCCATCAGCCTTGGCTACTAAACTCTCTA GTCCAAGTTTTGTGGAAAGGATATTTGGTCATGCATTGGAAGATTCACATTCAAAATCTGGTCTTGTCAATTCACTTTCTGTTTGTATCTCTATACTGGA TCCAAAAAGATCGGCAATGGCTTCTCCCTTGATGCATTCTTTCCGAAGCCAACATATGTACGAGTCTCCAATCCCTGTAAATCCAGAGACTATTAGTGCA ATGTTACCTAAACTTGGTGATTTGCTTATGCTATTGAATGTCTTGTCCGATGAGAAGATTTTGCCAACAACATATGGAGAACTGAAGCCTCCTCTTGGGA AACATCGTCTAAAGATTGTGGAATTCATTGCGGTGCTACTAAGAACTGGAAATGAAGCCACTGAAATGGAGTTGGTCAGCTCGAGAACCATTGAAAGAAT CCTTGATCTGTTCTTTGAGTACCCGTACAATAACGCCTTGCATCATCATGTAGAGAGTATCATAATGTCATGTTTGGAGACCAAGAGTGATGCTATGGTT GATCATCTTCTTCAAGAGTGTGATTTGATAGGAAAGTTTCTCCAAACAGATAAAAACCCTGTAATATCTGGTGATATTATCAAGCCAACCCTTCCTGCTG CTGGAAAACAAGCACCACGGGTAGGAAACCTTGGACACATTACACGAATTTCAAATAAGCTTGTTCAGTTGGGAAACAGCAGTAGCCGTATTCAGACTTA TCTACAGGAAAATAGTGAATGGAATGAGTGGCAAGCCAGTGTTTTGCAAGAGCGCAATGCAGTTGAAAATGTCTACCGATGGGCTTGCGGCCGGCCAACA GCATTGCAAGATAGGACACGTGACAGTGACGAGGATGACCTTCATGATCGAGATTATGATGTAGCAGCTCTAGCCAACAACTTAAGCCAGGCTTTTAGAT ACAAAATATATGGGAATGAGGATAATGAAGAGGACAATGGGGGCCTTGATCGTGATGATGAGGATGTCTACTTTGATGATGAGTCTGCCGAAGTTGTTAT ATCATCCCTAAGGCTTGGTGATGACCAAGGGAGCAGTCTGTTCACAAATTCAAACTGGTTTGCATTCCAAGACGACAGAATTGGTGATGCACCTGTGAGC ACATCGCCCGGAGAGATGATGGATCAGATTAACTTAAATGGAAACACAGATGCAAATGGTGGTAACAGCTGTAGTCATGACGAGGTGGTGGTGGGAGAGG AAGATGAGTTGACTGAAAGCAAGGATTCTGTCAATGGCACATCCACTTCCAACACAAACCTCCTTGATCAATTTCCTGGGATTGGTCCGGTTTCACTAAG TAGTGATGCAAATGCTCCTGATACCAGCTTCTTCAAATTTGAGGCACCAGACAATGAAGACTTGTTTGGAGATAGGCCTTTACCTGAATGGGTAGGATGG GGAGAGCCATCCGATTTGCAAGCAGCAGGGGGGTCAACTGTGAATCCATTTGAAGATCATGACAGCTCTGATGTCAATCTTTCCAGCCAAGCTGAAGCAG CAACGCCTGATGCTAGTTCCCCATCAGGTGGAGAGTCTATACTTCCAAATGGGTTATCACCCACCAAGGGTTCTAGTGATGGATCAGTTAGCAGTGATTC AAGTAAAAAATCTCCCACCTCACCTTCCTTGTTTGAAGAGGATGTTGAATTTGTTGGTGTTGAATTGGAAGGGACCGAGAAGGCAATGGACCAAGCTCTC AAGGAGGGGATAGTTGGTGAAGCAGGGCCTCTGAAGAGGAATATTGCACCAAAGGTGCCAGAGAAGGAGAAGTCTGATGATGCCGAGGCAGAGAACAAGG AGTTCAACGATGCGAACTATTGGAGGGTTGATGTTGTGGAAGGATGA
AA sequence Show only first row Show all	>Potri.009G014700.1 pacid=42771776 polypeptide=Potri.009G014700.1.p locus=Potri.009G014700 ID=Potri.009G014700.1.v4.1 annot-version=v4.1 MFWKLTTLSTSSPVESVLDKENFTLEELLDEEEIIQECKALNTRLINFLRDRAQVEQLLRYIIEEPSEDAESKRTFKFPFIACEIFTCEIDVILKTLVEE EELMNLLFSFLEPNRSHSALLAGYFSKVVVCLMLRKTVSLMNYVQAHQDVFRQLVDLIGITSIMEVLVRLVGADDHVYPNFTDVMQWLADSNLLEMIVDK LSPSNPPEVNANAAETLCAITRNAPSALATKLSSPSFVERIFGHALEDSHSKSGLVNSLSVCISILDPKRSAMASPLMHSFRSQHMYESPIPVNPETISA MLPKLGDLLMLLNVLSDEKILPTTYGELKPPLGKHRLKIVEFIAVLLRTGNEATEMELVSSRTIERILDLFFEYPYNNALHHHVESIIMSCLETKSDAMV DHLLQECDLIGKFLQTDKNPVISGDIIKPTLPAAGKQAPRVGNLGHITRISNKLVQLGNSSSRIQTYLQENSEWNEWQASVLQERNAVENVYRWACGRPT ALQDRTRDSDEDDLHDRDYDVAALANNLSQAFRYKIYGNEDNEEDNGGLDRDDEDVYFDDESAEVVISSLRLGDDQGSSLFTNSNWFAFQDDRIGDAPVS TSPGEMMDQINLNGNTDANGGNSCSHDEVVVGEEDELTESKDSVNGTSTSNTNLLDQFPGIGPVSLSSDANAPDTSFFKFEAPDNEDLFGDRPLPEWVGW GEPSDLQAAGGSTVNPFEDHDSSDVNLSSQAEAATPDASSPSGGESILPNGLSPTKGSSDGSVSSDSSKKSPTSPSLFEEDVEFVGVELEGTEKAMDQAL KEGIVGEAGPLKRNIAPKVPEKEKSDDAEAENKEFNDANYWRVDVVEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07990			SIT4 phosphatase-associated fa...		Potri.009G014700 [exp]	0	1
AT1G15280			CASC3/Barentsz eIF4AIII bindin...		Potri.003G056500 [exp]	3.60	0.8112
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	5.91	0.7368
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	6.92	0.7470
AT2G25760			Protein kinase family protein ...		Potri.001G189100 [exp]	7.93	0.7391
AT5G49880			mitotic checkpoint family prot...		Potri.003G000900 [exp]	12.84	0.7168
AT1G21080			DNAJ heat shock N-terminal dom...		Potri.005G260400 [exp]	14.83	0.6754
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.008G221500 [exp]	14.96	0.7235	Pt-ESD4.1
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.005G229300 [exp]	28.21	0.7388
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	30.88	0.7035
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	37.41	0.6836

Compare expression of checked genes

Potri.009G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.