Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARF10.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28350 705 / 0 ARF ARF10 auxin response factor 10 (.1) AT4G30080 681 / 0 ARF ARF16 auxin response factor 16 (.1) AT1G77850 348 / 2e-111 ARF ARF17 auxin response factor 17 (.1) AT1G19850 253 / 7e-73 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 252 / 1e-72 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT5G60450 249 / 6e-72 ARF ARF4 auxin response factor 4 (.1) AT1G59750 245 / 1e-71 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G37020 243 / 5e-70 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 245 / 6e-70 ARF ARF6 auxin response factor 6 (.1.2) AT2G33860 239 / 6e-70 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211700 [exp] 1123 / 0 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.010G223200 [exp] 815 / 0 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 808 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.006G127500 [exp] 741 / 0 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.016G090300 [exp] 730 / 0 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.002G089900 [exp] 372 / 1e-120 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 367 / 2e-118 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.003G142100 [exp] 259 / 2e-76 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.006G077800 [exp] 261 / 1e-74 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026510 [exp] 708 / 0 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 686 / 0 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 593 / 0 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 590 / 0 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 551 / 0 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10024753 [exp] 367 / 2e-118 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 362 / 2e-116 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10024754 [exp] 362 / 2e-116 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10016091 [exp] 330 / 4e-108 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10013942 [exp] 261 / 3e-77 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.009G014800.3 pacid=42770860 polypeptide=Potri.009G014800.3.p locus=Potri.009G014800 ID=Potri.009G014800.3.v4.1 annot-version=v4.1 ATGAAAGAGACAGAGAAGAAGAGCTTGGATCCACAACTATGGCAAGCCTGTGCAGGAAGCATGGTTCATATCCCTCCACTCAACAGTACAGTCTTTTATT TTCCACAAGGTCATGCCGAGCACTCTCAATCCCCTGTCAATTTCCCTCAAAGAATCCCTTCACTCATCCTCTGCCGTGTTGCCACTGTCAAATTCCTTGC CGACCCTGACACCGATGAGGTCTACGCCAAGATCGGCTTCGTCCCTTTACCAAACACCGACCTTGATTTCGCTCATGATAGGGGACTATGTGGTAATGGG AACGACGGTGACAGCTGCCCAGACAAGCCGGCCTCTTTTGCAAAGACACTAACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTGCCTAGATACT GTGCAGAGACGATTTTTCCAAGGCTGGATTACTCTTCGGATCCTCCCTTGCAGACTGTGATTGCTAAAGATGTGCACGGTGAGGTGTGGAAGTTCAGGCA TATTTATAGAGGGACACCAAGGAGGCATTTGTTGACTACTGGATGGAGCACTTTTGTTAACCAGAAGAAATTGGTTGCTGGGGATTCAATTGTGTTCTTG AGGGCTGAAAATGGCGATCTTCGTGTTGGAATTCGCCGCTCCAAGAGGGGGATTGGAATTGGAAGTAGACCTGAATCATCATTAACTACTGGGTGGAATT CCAACAATGCTACCTGTGCTATACCATATGATGGATTTTCACTTTTTGTCAAGGAAGATGAGATGCGAAATGGGGGAATGAAGGGAAGGGGGAGGGTGAA GCCTGAAGAGGTTTTGGAGGCTGCTGGTCTAGCTGCTAATGGAAAGCCTTTTCAAGTCGTTTATTATCCGCGATCAAGCACCCCAGAGTTTTGTGTCAAG GCCTCTTCAGTGAGGGCAGCAATGAGGATCGGTTGGTGCTCTGGGATGAGGTTCAAGATGGCTTTTGAAACTGAGGACTCTTCACGGATTAGCTGGTTTA TGGGGACTGTTACCTCTGTTCAGGTTGCTGATCCCGTCCGATGGCCTAATTCTCCATGGCGGCTGCTCCAGGTGGCATGGGATGAGCCAGATTTGCTACA AAATGTAAAGCGTGTCAGCCCATGGCTGGTTGAATTGGTGTCAAATATGCCAGTTATCCACCTGTCACCCTTCTCACCACCAAGAAAGAAGTCGCGATTC CCACAACAGTTAGGCTTTCCACTTGACCTCCAATTTCAATTGCCATCATTTTCAGGCAACCCCCTTGGGCCCAGCAGCCCCTTGTGTTGTCTATCCGATA ACACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATTTCATTATCTGATATCCAGTTTAACAACAAACAGCAGTCAGGGATGTTTCTATC CAGTCTCCAGCGGTTCAATCCACATTCTAGAAATTCTGAAACTTACCTGACAGGTCACACAAACAGCAATGAGAATATATCTTGCTTGTTAACAATGGGG AACAGCAACCCAAATTTGGAGAAATCTGATAATGTAAAGAAACACCAGTTTCTACTCTTTGGTCAACCAATACTTATTGAGCAGCATATATCTCATAGCT GTTCAACTGATGCAGTCTCTCAAGTTATTAATGAGAGAAATTCATCTGACGAGTCTTCCAGCAAGGAAAAAATTTCTGATGTATTACTGTCTGCACCTGG GAAAAAGATTTCACAAGTAAAGTCGTGCGGTACTGGGTTTTCATGGCACCAGAGTCTTCATAATACCAGTGAAATTGGCAAAGATACTGGTCCCTGCAAG GTATTTTTGGAGTCAGAGGATGTGGGATGGACCCTCGATCTCTCTGCTCTTTGTTCTTACGAGGAGCTACATGGAAAACTGGCCAACATGTTTGGTATAG AGAGATCAGAAATGTCGAGCCATGTGCTCTACCGAGATGCGACAGGTTCTGTTAAACAGATTGGAGATGAACCATTCAGTGTTTTTATGAAAACTGCAAA AAGATTGACAATTTTGATGAACCAACCTAGCACAGAAAGTTGGGAGGACATGGATCACAGGGATGTGAAATGCTGA
AA sequence Show only first row Show all	>Potri.009G014800.3 pacid=42770860 polypeptide=Potri.009G014800.3.p locus=Potri.009G014800 ID=Potri.009G014800.3.v4.1 annot-version=v4.1 MKETEKKSLDPQLWQACAGSMVHIPPLNSTVFYFPQGHAEHSQSPVNFPQRIPSLILCRVATVKFLADPDTDEVYAKIGFVPLPNTDLDFAHDRGLCGNG NDGDSCPDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSSDPPLQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL RAENGDLRVGIRRSKRGIGIGSRPESSLTTGWNSNNATCAIPYDGFSLFVKEDEMRNGGMKGRGRVKPEEVLEAAGLAANGKPFQVVYYPRSSTPEFCVK ASSVRAAMRIGWCSGMRFKMAFETEDSSRISWFMGTVTSVQVADPVRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKSRF PQQLGFPLDLQFQLPSFSGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDIQFNNKQQSGMFLSSLQRFNPHSRNSETYLTGHTNSNENISCLLTMG NSNPNLEKSDNVKKHQFLLFGQPILIEQHISHSCSTDAVSQVINERNSSDESSSKEKISDVLLSAPGKKISQVKSCGTGFSWHQSLHNTSEIGKDTGPCK VFLESEDVGWTLDLSALCSYEELHGKLANMFGIERSEMSSHVLYRDATGSVKQIGDEPFSVFMKTAKRLTILMNQPSTESWEDMDHRDVKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Potri.009G014800 [exp]	0	1	ARF10.1
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.001G049100 [exp]	4.89	0.8077
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.014G050000 [exp]	5.47	0.7961
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.006G003700 [exp]	12.80	0.6525
AT4G27220			NB-ARC domain-containing disea...		Potri.005G061860 [exp]	14.42	0.7550
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.002G138900 [exp]	15.19	0.7624
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	17.02	0.7750
AT2G33360			Protein of unknown function (D...		Potri.010G066200 [exp]	17.32	0.7507
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182000 [exp]	22.18	0.7414
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182321 [exp]	22.51	0.7388
					Potri.005G162201 [exp]	23.49	0.7632

Compare expression of checked genes

Potri.009G014800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.