Plant FIBer expression Database

Potri.009G014900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07970 703 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038462
[exp]
808 / 0 AT1G07970 740 / 0.0 unknown protein
Lus10023345
[exp]
799 / 0 AT1G07970 736 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09786 CytochromB561_N Cytochrome B561, N terminal
Representative CDS sequence
>Potri.009G014900.2 pacid=42771439 polypeptide=Potri.009G014900.2.p locus=Potri.009G014900 ID=Potri.009G014900.2.v4.1 annot-version=v4.1
ATGGAAACACGAGGTCCTCCAACTCCATCTTCCAAGTTTGCAGCGTACCAAAACCCAGCATTCTCTGCTGCCCTGACCGCCAAAAGCCTCCGGCCCTCTA
AATCCGCTCTCCTCTTCATCGTTTCTCTATCCTCCGCTTCCGCCTTTTCTCTACTCTCAACAATCTCCAGGGAAAATGGGTTGATCGAAAAGATGAGCTT
CAGAATTTTTTCGCAGGAAGTGGCTTATTTGTTTGCAAAGGCAGCACAGGCAGTGGTGGGTTTATTATTTATTGGATCTGTATTCTCCATCTTCAAGGCC
ATCTCTTTGTACAGAGTAAAAATTGCTGGTGTGCGTATAACCTCTCCCTCTAAAGATGCTAGAGATCAACCACAGCTAACAAACCGTCAATTGGGGCTTA
TAGGAGTAAAGCCAAAAGTTGAGCCTGTTGTATCTGAATCTTCAAAGAAACCTCCCAAGTCAAACCCCACATCATCCGCTTCTAATGTCCTTGTTCCAAT
TCATCAGCTAATTACCTGTTCGCATCAGAAGTCTCGAGTTGGCTCTGATAAATCAAATGCTGGAAGTGGAAATAAGATGGCCTCTTTTAGCACCCCATCC
AAATCACGGAATTCTCCATCTTTTTATCTTGTCCCTGGGGCCAATTCACCTCTGCCTTCTGTTCAGAGTTCTCCAGCGATCGATTCAGCAGTCTCAACCC
CTTGGTCAGATAAGCGAGCCTCTTATACTAAAGAGATAAGAACAGAAGAACAACTTGAACAATTCTTGGCAGAAGTAGATGAGAAAATCAGTGAATCAGC
TGGTAAATATGCCACTCCACCTCCCACCATAGGGGGCTTTGGCATGGCTAGTCCTAATACTGTAGCAAGTCCAGCTAATACCCCTGGAGTTACAAGGAGC
ACACCCTTAAGGCCTGTGAGGATGTCTCCTGGTTCCCAGAAATTTACCACTCCCCCTAAGATAGGTGAGGGTGACCTTCCTCCACCAATGTCCATGGAAG
AGTCCATTGAAGCTTTCAAAAATTTGGGCATTTATCCTCAAATTGAGCGCTGGCATGATCGCCTCAGGCAATGGTTTTCATCAGTTTTGCTTAATCCTCT
ACTTGACAAGATTGAAAGCAGTCATATTCAGGTAATGCAAGCAGCTGCTAAACTTGGTATTTCAATAACAATTAGTCAAGTAGGAAGTGATACACCTAGT
GAAAATACTGCTACTGTGTCTTCAACTGATAGGAAGGAATGGCAACCGACATTCTCTCTAGATGAAGATGGACTTCTCAGTCAGTTACGGGCTACTCTTT
TGCAGGCTCTTGATGCTTCCACCTTGAAGTTACCTCTATCCAGTCTCCAGCAATCTCCGCAGCAAAATCCTATGATATCAATTATGCAGGAGTGTGTGGA
TGCCATCACTAAACACCAGAGGCTTCTTGCGTTAATGAGAGGAGAGTGGGCCAGAGGTTTGCTGCCACATAGCAATGTTCGGGAAGATTATATGGTTCAG
AGGATCCGAGAGCTTGCTGAAGGAACCTGCTTGAAGAATTATGAGTATCCAGGAAGCGGGGAAGTTTATGACAAAAAGAATAAAAAGCGTACTCTTGGGC
TTCTGGATGATCCTCATTTGCTTCTATATCTTTTTTGTGCTTTCCTTGAACATCCAAAGTGGATGTTGCATGTAGATCCCGCATCTAATGCTGGAGCTCA
GTCTAGCAAGAATCCATTATTCCTGGGGGTTCTGCCTCCTAGAGAAAGGTTCCCTGAGAAGTACATATCTGTCATATCCAGTGCTCCTTCCATGCTTCAC
CCAGGAGCTTTAGTACTAGCTGTTGGAAAGCAAAGCCCTACAGTATTTGCTTTATACTGGGATCAGAAGCTGCAGTTCTCTCTCCAGGGAAGAACAGCTT
TGTGGGATTCCATCTCGCTCCTGTGCCACAGGATCACGGTTGGATATGGCGCTGTAGTTCGGGGCATGCATCTTGGTTCTTCAGCCCTGAGACTCTGCCC
AGTTCTCGAGTCAGAAATCGAAGACTGA
AA sequence
>Potri.009G014900.2 pacid=42771439 polypeptide=Potri.009G014900.2.p locus=Potri.009G014900 ID=Potri.009G014900.2.v4.1 annot-version=v4.1
METRGPPTPSSKFAAYQNPAFSAALTAKSLRPSKSALLFIVSLSSASAFSLLSTISRENGLIEKMSFRIFSQEVAYLFAKAAQAVVGLLFIGSVFSIFKA
ISLYRVKIAGVRITSPSKDARDQPQLTNRQLGLIGVKPKVEPVVSESSKKPPKSNPTSSASNVLVPIHQLITCSHQKSRVGSDKSNAGSGNKMASFSTPS
KSRNSPSFYLVPGANSPLPSVQSSPAIDSAVSTPWSDKRASYTKEIRTEEQLEQFLAEVDEKISESAGKYATPPPTIGGFGMASPNTVASPANTPGVTRS
TPLRPVRMSPGSQKFTTPPKIGEGDLPPPMSMEESIEAFKNLGIYPQIERWHDRLRQWFSSVLLNPLLDKIESSHIQVMQAAAKLGISITISQVGSDTPS
ENTATVSSTDRKEWQPTFSLDEDGLLSQLRATLLQALDASTLKLPLSSLQQSPQQNPMISIMQECVDAITKHQRLLALMRGEWARGLLPHSNVREDYMVQ
RIRELAEGTCLKNYEYPGSGEVYDKKNKKRTLGLLDDPHLLLYLFCAFLEHPKWMLHVDPASNAGAQSSKNPLFLGVLPPRERFPEKYISVISSAPSMLH
PGALVLAVGKQSPTVFALYWDQKLQFSLQGRTALWDSISLLCHRITVGYGAVVRGMHLGSSALRLCPVLESEIED

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G07970 unknown protein Potri.009G014900
[exp]
0 1
AT1G47490 ATRBP47C RNA-binding protein 47C (.1.2) Potri.014G034600
[exp]
6.48 0.7646
AT4G39730 Lipase/lipooxygenase, PLAT/LH2... Potri.005G077000
[exp]
9.89 0.6905
AT1G73740 UDP-Glycosyltransferase superf... Potri.012G053600
[exp]
13.03 0.6642
AT2G44120 Ribosomal protein L30/L7 famil... Potri.006G073200
[exp]
18.16 0.7848
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.005G098100
[exp]
26.53 0.7796 LOS1.3
AT4G39200 Ribosomal protein S25 family p... Potri.010G239300
[exp]
28.35 0.7820
AT4G23620 Ribosomal protein L25/Gln-tRNA... Potri.001G097801
[exp]
32.98 0.7460
AT5G61170 Ribosomal protein S19e family ... Potri.015G056100
[exp]
35.77 0.7590
AT4G02930 GTP binding Elongation factor ... Potri.014G138100
[exp]
39.59 0.7629 TUFA.4
AT5G42150 Glutathione S-transferase fami... Potri.015G038300
[exp]
39.68 0.7594

Potri.009G014900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.