Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60410 1148 / 0 ATSIZ1, SIZ1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) AT5G41580 64 / 4e-10 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G210200 [exp] 1512 / 0 AT5G60410 1146 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.008G042300 [exp] 845 / 0 AT5G60410 775 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.010G219600 [exp] 823 / 0 AT5G60410 732 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.003G133000 [exp] 62 / 2e-09 AT5G41580 466 / 1e-151 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038464 [exp] 1124 / 0 AT5G60410 1006 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10036123 [exp] 1081 / 0 AT5G60410 913 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10023344 [exp] 1062 / 0 AT5G60410 928 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10011634 [exp] 1010 / 0 AT5G60410 847 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0306 [poplar] [flax] HeH PF02037 [poplar] [flax] SAP SAP domain CL0229 [poplar] [flax] RING PF02891 [poplar] [flax] zf-MIZ MIZ/SP-RING zinc finger
Representative CDS sequence Show only first row Show all	>Potri.009G015000.9 pacid=42771144 polypeptide=Potri.009G015000.9.p locus=Potri.009G015000 ID=Potri.009G015000.9.v4.1 annot-version=v4.1 ATGGATTTAGTAGCTAGTTGCAAGGACAAATTGGTGTATTTTCGAATAAAAGAGCTGAAGGATGTCCTGACTCAGTTAGGTCTTTCAAAGCAGGGGAAGA AGCAGGACCTTGTTGACCGGATATTAGCTATTCTGTCTGATGAACAAGTTTCCAAGATATGGGCAAAGAAGAGTGCCATTGGAAAGGAAGAGGCGGCAAA ACTAGTGGATGACACTTACAGGAAAATGCAAGTGTCCGGGGCCACTGATTTAGCATCAAAGGGACAGGGCGTGTCTAATTGCAGTAATTCCAAATTTAGT GGAGAAATGGATGAACCATTTCACTCTGATACAAAAGTTCGCTGTCCATGTGGAACCTCATTGGAGACAGAGTCGATGATTAAGTGTGAGGATTTTAAAT GTCATGTGTGGCAACACATTGGTTGCGTTATAATTCCAGAAAAAGCCATGGAGGGCACTCCACAATTTCCGGATGTGTTCTATTGTGAGACTTGTCGACT AAGCAGGGCTGACCCCTTTTGGGTTACAGTTGCACAACCTCTATATCCTGTGAAGCTGGTTGCTACAAATGTTCCAACTGATGGTTCAAGCCCAGCGCAG GGTGTGGAGAAAACATTTCATCTCACTAGAGCAGACAAGGATCTACTGGCAAAACAAGAATATGATATTCAGGCCTGGTGCATGCTTTTGAATGACAAAG TTCCATTTAGGATGCAATGGCCGCAGTATGCAGATCTCCAGGTTAATGGTATTGCTGTTCGTGCTATTAATAGACCTGGCTCGCAATTGCTAGGCGCTAA TGGTCGTGATGATGGTCCAATTATCACGTCATGTGCAAAAGATGGAATCAATAAGATATCATTAACCGGATGTGATGCTCGAATCTTCTGCTTAGGAGTT AGAATTGTAAAGCGGCGAACAGTTCAGCAGATATTCAACTTGATTCCCAAGGAGTCTGAAGGTGAGCGTTTTGAAGATGCACTTGCTCGTGTTTGTCGCT GCGTTGGTGGTGGAACTGCAACAGATGATGCCTATAGTGACAGTGACAGTGACCTGGAAGTTGTTGCAGATTCTTTTGGTGTCAATCTTCGTTGTCCTAT GAGCGGTTCAAGAATGAAGATTGCAGGAAGATTCAAATCTTGTGCGCACATGGGCTGTTTTGACCTGGAAGTTTTTGTGGAGCTGAACCAGCGTTCTAGG AAGTGGCAGTGCCCCATCTGTCTCAAGAACTACTCCTTGGAAAATATAATCATTGACCCATATTTCAATCGCATCACATCTAAGATGAGGCATTGCGTGG AAGATATAACAGAGATTGAGGTGAAGCCTGATGGTTCCTGGCGAGTGAAAACAAAAACTGAATCTGACCATAGGGATGCTGGAGAACTTGCTCAATGGCA TAATCCTGATAGCACTCTCTGTGTCCCTTACACTGGAGAACTCAAATCAAAAGTGGAAATGAAGCAGATCAAGCAGGAAGGTGGTTCAGAAGGTAATGCT GGTGCTAGTTTGAAACTTGGAATCAGAAAGAATCGTAATGGGTTTTGGGAAGTCAGTAAACCTGACGATATGAACACCTCCTCTTCAGGTAGATTGCAAG AAAACTTTGAACTCTATGAACAGAAAGTTATTCCTATGAGCAGCAGTGCTACTGGTAGTGGTCGTGATGGGGAAGATCCAAGTGTAAATCAAGATACTGG TGAAAATTTTGAATTCACAAACAATGGAATGGAGCTTGATTCTTTATCGTTGAATGTATATTCAACGTACGGATTCACTGACCAAAATTTATCTGCACCA GTAGGGAATGCAGAAGTCATTGTTCTTAGTGATTCAGATGAAGAAAATGATATATTAATGTCCTCTGGATCTGTCTACAAGAGCAATCAAAATGGTGGTG CTACTATTTCTGTGCCCTCTCCTGAAATTGCAGATCATTTTCTGGAAGATCCTACACTTGGGACTGGTGGAAATTCTTGCTTGGGTCTTTTCAATGCTGA TGAATATGGGATGCCCCTCTGGCCACTACCTCCCGGAAACCAAGCTGGTCCGGGATTCCAATTATTTAATTCAGATGTCTCAGATGCCTTGGTTGATTTA CCGCATGATCCTGTTAACTGTCCCTCTTCAATGAATGGCTACACATTAGCTCCAGAAACTGTCATGAGATCTACTTGTTTAATTCCAGATTCTTCTATTG GTCGATCAGACACGGATGTAAATGATGGTTTGGTTGATAATCCCTTGGCTTTTGGCAGAGAAGATCCCAGTCTTCAAATCTTTCTTCCAACTGGGCCTTC AGATGCATCAATGCAGTCTGATATGAGGGATCAAGCTGATGTGTCAAATGGTGTCCGTACTGATGATTGGATCTCTCTTAGGCTTGGTGGTGGTGGTGCT ACTGGCAATCACAGCGAGGCAGTTCCTTCAACAAATAGACTGAATTCAAGGCAGCAGATGCCATCTAGAGAAGATGGCATGGATTTGGCTGGCACTGATT CTTTGCATCTTGGTATCAATGATGGCAGATCTGAAAAGGCAAGTCGACAAAGATCAGACAGTCCTTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGACC ACGGTTGTATCTTTCTATTGACTCAGACTCTGAGTGA
AA sequence Show only first row Show all	>Potri.009G015000.9 pacid=42771144 polypeptide=Potri.009G015000.9.p locus=Potri.009G015000 ID=Potri.009G015000.9.v4.1 annot-version=v4.1 MDLVASCKDKLVYFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDEQVSKIWAKKSAIGKEEAAKLVDDTYRKMQVSGATDLASKGQGVSNCSNSKFS GEMDEPFHSDTKVRCPCGTSLETESMIKCEDFKCHVWQHIGCVIIPEKAMEGTPQFPDVFYCETCRLSRADPFWVTVAQPLYPVKLVATNVPTDGSSPAQ GVEKTFHLTRADKDLLAKQEYDIQAWCMLLNDKVPFRMQWPQYADLQVNGIAVRAINRPGSQLLGANGRDDGPIITSCAKDGINKISLTGCDARIFCLGV RIVKRRTVQQIFNLIPKESEGERFEDALARVCRCVGGGTATDDAYSDSDSDLEVVADSFGVNLRCPMSGSRMKIAGRFKSCAHMGCFDLEVFVELNQRSR KWQCPICLKNYSLENIIIDPYFNRITSKMRHCVEDITEIEVKPDGSWRVKTKTESDHRDAGELAQWHNPDSTLCVPYTGELKSKVEMKQIKQEGGSEGNA GASLKLGIRKNRNGFWEVSKPDDMNTSSSGRLQENFELYEQKVIPMSSSATGSGRDGEDPSVNQDTGENFEFTNNGMELDSLSLNVYSTYGFTDQNLSAP VGNAEVIVLSDSDEENDILMSSGSVYKSNQNGGATISVPSPEIADHFLEDPTLGTGGNSCLGLFNADEYGMPLWPLPPGNQAGPGFQLFNSDVSDALVDL PHDPVNCPSSMNGYTLAPETVMRSTCLIPDSSIGRSDTDVNDGLVDNPLAFGREDPSLQIFLPTGPSDASMQSDMRDQADVSNGVRTDDWISLRLGGGGA TGNHSEAVPSTNRLNSRQQMPSREDGMDLAGTDSLHLGINDGRSEKASRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.009G015000 [exp]	0	1
AT1G64140			unknown protein		Potri.001G097200 [exp]	2.00	0.8462
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	4.79	0.8721
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Potri.013G081400 [exp]	6.32	0.8259
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.004G174700 [exp]	7.48	0.8305
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	8.30	0.8448
AT2G15900			Phox-associated domain;Phox-li...		Potri.009G108300 [exp]	9.74	0.8333
AT5G13590			unknown protein		Potri.010G213800 [exp]	13.96	0.7924
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Potri.017G042500 [exp]	14.28	0.8340
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	17.86	0.8012
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.009G158600 [exp]	19.07	0.8183

Compare expression of checked genes

Potri.009G015000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.