Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45600 388 / 7e-137 TET3 tetraspanin3 (.1) AT5G60220 336 / 8e-116 TET4 tetraspanin4 (.1) AT2G23810 242 / 1e-79 TET8 tetraspanin8 (.1) AT4G30430 233 / 6e-76 TET9 tetraspanin9 (.1) AT4G28050 224 / 6e-73 TET7 tetraspanin7 (.1) AT5G46700 211 / 1e-67 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT3G12090 202 / 8e-64 TET6 tetraspanin6 (.1) AT2G19580 190 / 3e-59 TET2 tetraspanin2 (.1) AT1G18520 180 / 1e-55 TET11 tetraspanin11 (.1) AT4G23410 162 / 2e-48 TET5 tetraspanin5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G177900 [exp] 238 / 7e-78 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.018G099800 [exp] 236 / 2e-77 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.003G093000 [exp] 229 / 9e-75 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.010G220300 [exp] 227 / 9e-74 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.008G041600 [exp] 225 / 5e-73 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.001G141400 [exp] 213 / 3e-68 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 211 / 2e-67 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.015G055700 [exp] 181 / 5e-56 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G107200 [exp] 155 / 4e-46 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038473 [exp] 419 / 3e-149 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10023338 [exp] 326 / 3e-113 AT3G45600 347 / 1e-121 tetraspanin3 (.1) Lus10023216 [exp] 256 / 4e-85 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10008891 [exp] 250 / 9e-83 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 249 / 2e-82 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 244 / 2e-80 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10017336 [exp] 237 / 1e-77 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10001668 [exp] 224 / 1e-72 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10008563 [exp] 208 / 3e-66 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10007998 [exp] 184 / 5e-57 AT2G19580 369 / 6e-130 tetraspanin2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [poplar] [flax] Tetraspannin PF00335 [poplar] [flax] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Potri.009G015100.1 pacid=42771003 polypeptide=Potri.009G015100.1.p locus=Potri.009G015100 ID=Potri.009G015100.1.v4.1 annot-version=v4.1 ATGAGATCTAGCAATCACTTGATAGGGGTACTCAACTTCCTGACCTTTTTGCTATCAATACCCATCCTAGGAGGTGGTATATGGCTAAGCAGCAGAGCCA ACAACACAGATTGTCTAAAATTCTTACAGTGGCCATTGATAATAATTGGGATCTCAATCATGGTCGTTTCTTTAGCCGGTTTCGCTGGCGCGTGTTATCG AAACACTTTCTTGATGTGGGCTTACCTATTTGTTATGTTCTTCATCATCGCCGCGCTTTTAGGGTTCATCATCTTTGCCTATGTTGTCACCGATAAAGGG TCGGGCCGCCCACTCCCGAATCGTGCGTATTCTGACTATTATCTGCATGACTATTCAGGGTGGTTGAAGGATCGAGTAGCTAGTGATAGCTACTGGCACA AGATTGGCTCTTGTATACGAGATTCTAAGGTTTGTGGCAAGATGGGGAGAACTACTTCTGGCGTCCCTGAGACTGCAGATACGTTCTATAGCAGGAAGCT CAGCTCTATTGAGTCTGGTTGTTGCAAGCCCCCTACAGAATGCGGCTTCACTTATATGAACGAGACTTTCTGGTCATCATCTGGAGGAGTTGTTTACAGC ACTGACTGTAACACCTGGAACAACGATCAAGAGCGACTGTGCTATTCCTGCAATTCTTGCAAAGCTGGTTTGCTAGCCAACCTGAGGAAGAGTTGGAGGA AGGTCTCGGTCATTAACATCGTCATATTAATCATTCTAGTGATTGCCTATGTGGTTGGCTGTGCAGCCTTCAGGAATAATCGCCGGATCGATAACGATGA ACCCTACGGGGAAGCAAGGATGACCAAGTCTCAGCCTAGCAGAATCCATCTTTAA
AA sequence Show only first row Show all	>Potri.009G015100.1 pacid=42771003 polypeptide=Potri.009G015100.1.p locus=Potri.009G015100 ID=Potri.009G015100.1.v4.1 annot-version=v4.1 MRSSNHLIGVLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGISIMVVSLAGFAGACYRNTFLMWAYLFVMFFIIAALLGFIIFAYVVTDKG SGRPLPNRAYSDYYLHDYSGWLKDRVASDSYWHKIGSCIRDSKVCGKMGRTTSGVPETADTFYSRKLSSIESGCCKPPTECGFTYMNETFWSSSGGVVYS TDCNTWNNDQERLCYSCNSCKAGLLANLRKSWRKVSVINIVILIILVIAYVVGCAAFRNNRRIDNDEPYGEARMTKSQPSRIHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45600		TET3	tetraspanin3 (.1)		Potri.009G015100 [exp]	0	1
AT5G53420			CCT motif family protein (.1.2...		Potri.012G014000 [exp]	2.82	0.7818
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.004G207100 [exp]	4.89	0.7720
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Potri.005G204500 [exp]	7.48	0.7587	PEL1.2
AT1G02630			Nucleoside transporter family ...		Potri.006G068100 [exp]	9.94	0.8251
AT1G74320			Protein kinase superfamily pro...		Potri.001G032000 [exp]	10.95	0.7452
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.002G135100 [exp]	19.07	0.7454
					Potri.006G083850 [exp]	20.12	0.7632
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G132300 [exp]	22.13	0.7033
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141600 [exp]	23.02	0.7113
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Potri.012G062300 [exp]	25.00	0.6840

Compare expression of checked genes

Potri.009G015100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.