Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22050 318 / 9e-109 Protein kinase superfamily protein (.1.2) AT3G19300 155 / 1e-42 Protein kinase superfamily protein (.1) AT1G49730 145 / 3e-39 Protein kinase superfamily protein (.1.2.3.4) AT1G76370 117 / 3e-30 Protein kinase superfamily protein (.1) AT1G71830 119 / 6e-30 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT5G02800 116 / 9e-30 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 117 / 1e-29 Protein kinase superfamily protein (.1.2) AT1G20650 115 / 2e-29 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT2G23950 116 / 4e-29 Leucine-rich repeat protein kinase family protein (.1) AT1G34210 114 / 2e-28 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215000 [exp] 494 / 2e-178 AT5G22050 355 / 3e-123 Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 152 / 1e-41 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 148 / 3e-40 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.002G009300 [exp] 123 / 2e-32 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 121 / 2e-31 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 121 / 5e-31 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G094700 [exp] 121 / 1e-30 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.003G166900 [exp] 117 / 1e-29 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.005G083300 [exp] 117 / 2e-29 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013365 [exp] 311 / 7e-106 AT5G22050 301 / 8e-102 Protein kinase superfamily protein (.1.2) Lus10004110 [exp] 273 / 3e-90 AT5G22050 274 / 1e-90 Protein kinase superfamily protein (.1.2) Lus10014071 [exp] 168 / 4e-47 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10019844 [exp] 166 / 1e-46 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10030741 [exp] 123 / 4e-32 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10016021 [exp] 116 / 1e-29 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10012814 [exp] 115 / 7e-29 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 114 / 8e-29 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 115 / 9e-29 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022129 [exp] 115 / 1e-28 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.009G015600.1 pacid=42772318 polypeptide=Potri.009G015600.1.p locus=Potri.009G015600 ID=Potri.009G015600.1.v4.1 annot-version=v4.1 ATGGATCGCCTAATCCGCAAGATGAGGCCTTACCTTCTGGCTTGGCATCACCGATCTCGTTCTAGTCCAGAATCGTCAGTGAGGCGCTTCTCATACAAAG ATATAAAGAGGGCGACGGATGGTTTTCATCGTATAATATATAGCAATTCTCATGGGGCTGCCTACAGGGCTAGATTTCAAGATGGTGAGGTTGCGTTGGT AAAGGAAGTAAAAGACTTGAATCAAGGAAAGGACAATTTTTTAAAAGAAGTTCAACTTTTGGGGCAGTTGCATCATCGCCACCTTCTTGCACTTAAAGGC TTTTCCACAGGACATAAGAGGTTGCTAGTGTATGACAACATAGAAATGGGAAGCTTGAAGGAACATCTCAATGATCCTCTTAAAACTCCCTTGAATTGGA AAACAAGGTTACAAATAGCCATTGGTGTAGCAGCTGCTTTGGAATACTTGCTTCTCTTCAGTAACCCACCAGTATATCATGTTTCCATCAGCGCAAGTAA CATAATGCTAGATGAAAACTACATCGCAAAGATCTCCGATGTCGGCCTTATTAATTCCGTTGGAGCTAATGTAACAGTGCCTCATTCCTCGAATTCAGAA GATTGCATGGATCACACATTTGGAAACTTAACTTTTCAGCTTGGTGTGCTAATCCTGGAGCTGATAACTGGTCAATCATCAGAGAACGGAATCACGGATT TAATCCAGTGGATCCAAGAGTCCCGTTATCGCAGTTCGATTCAGAAGATGATTGACCCGGATCTAGGAAACAATTATGACTCTAGAGAGCTTAAAAATCT TCTAGCTGTAGCAAGATTGTGTATAAAATCTGGGGATAAGCCAAAATTCTCTATTCCCCAGATATTTAGGTATCTCCAGAAGAAAGCAGAAAACACATGT AATTAG
AA sequence Show only first row Show all	>Potri.009G015600.1 pacid=42772318 polypeptide=Potri.009G015600.1.p locus=Potri.009G015600 ID=Potri.009G015600.1.v4.1 annot-version=v4.1 MDRLIRKMRPYLLAWHHRSRSSPESSVRRFSYKDIKRATDGFHRIIYSNSHGAAYRARFQDGEVALVKEVKDLNQGKDNFLKEVQLLGQLHHRHLLALKG FSTGHKRLLVYDNIEMGSLKEHLNDPLKTPLNWKTRLQIAIGVAAALEYLLLFSNPPVYHVSISASNIMLDENYIAKISDVGLINSVGANVTVPHSSNSE DCMDHTFGNLTFQLGVLILELITGQSSENGITDLIQWIQESRYRSSIQKMIDPDLGNNYDSRELKNLLAVARLCIKSGDKPKFSIPQIFRYLQKKAENTC N

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22050			Protein kinase superfamily pro...		Potri.009G015600 [exp]	0	1
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Potri.013G000400 [exp]	2.64	0.7550
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.004G047300 [exp]	10.39	0.6570
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.007G109400 [exp]	13.26	0.6782
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.011G148000 [exp]	20.85	0.7124	ACT6
AT3G48425			DNAse I-like superfamily prote...		Potri.015G088900 [exp]	30.38	0.6805
AT4G30850		HHP2	heptahelical transmembrane pr...		Potri.018G102400 [exp]	30.74	0.7039
AT5G57100			Nucleotide/sugar transporter f...		Potri.018G139500 [exp]	31.30	0.6547
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	31.67	0.6749
AT3G58610			ketol-acid reductoisomerase (....		Potri.014G055100 [exp]	32.63	0.7096
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.018G068600 [exp]	36.66	0.7092

Compare expression of checked genes

Potri.009G015600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.