Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PM37.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44110 629 / 0 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 616 / 0 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G62600 168 / 2e-48 ATERDJ3B DNAJ heat shock family protein (.1) AT2G22360 153 / 5e-42 DNAJ heat shock family protein (.1) AT5G48030 152 / 3e-41 GFA2 gametophytic factor 2 (.1) AT4G39960 143 / 4e-38 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G17830 136 / 4e-35 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G28210 134 / 4e-35 ATJ1 DNAJ heat shock family protein (.1.2) AT1G80030 134 / 9e-35 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G47940 110 / 4e-27 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018800 [exp] 680 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 676 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 546 / 0 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 298 / 3e-99 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.001G215132 [exp] 231 / 8e-75 AT3G44110 167 / 5e-51 DNAJ homologue 3 (.1.2) Potri.014G122600 [exp] 167 / 3e-48 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 162 / 5e-46 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 151 / 3e-41 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 149 / 2e-40 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004109 [exp] 627 / 0 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 525 / 0 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10042891 [exp] 517 / 0 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008652 [exp] 308 / 3e-103 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10002733 [exp] 308 / 4e-103 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 303 / 6e-101 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10032100 [exp] 166 / 1e-47 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 163 / 2e-46 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 162 / 4e-46 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 156 / 7e-44 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF00684 [poplar] [flax] DnaJ_CXXCXGXG DnaJ central domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G015700.1 pacid=42772124 polypeptide=Potri.009G015700.1.p locus=Potri.009G015700 ID=Potri.009G015700.1.v4.1 annot-version=v4.1 ATGTTTGGGAGAGCACCAAAGAAGAGTGATAACACAAGGTACTATGAGATACTAGGGGTGTCAAAGAATGCTAGTCAAGATGATTTGAAGAAGGCTTATA GGAAAGCTGCCATCAAGAATCACCCTGATAAAGGTGGTGATCCTGAGAAGTTTAAAGAGCTGGCTCAGGCGTATGAGGTTCTGAGTGATCCTGAAAAGCG CGAAATTTATGATCAGTATGGGGAAGAGGCACTAAAGGAAGGGATGGGCGGTGGCGGTGCTGGCCATAACCCTTTCGATATTTTTGAGTCTTTCTTCGGT GGGAATCCTTTCGGTGGTGGTGGTAGCCGAGGAAGGAGGCAGAGACGGGGAGAGGATGTGGTTCATCCATTGAAGGTGTCATTGGAGGATTTGTACCTTG GCACGTCAAAGAAGCTTTCCTTAACCCGGAATGTGATTTGTTCTAAGTGCAATGGAAAAGGATCGAAATCTGGAGAGTCGATGAAGTGTACTGGCTGCCA GGGAAGTGGCATGAAAGTCTCAATAAGGCAACTTGGCCCTTCAATGATTCAACAGATGCAGCATCCTTGCAATGAATGCAAGGGAACGGGTGAGACCATT AGTGATAAGGATCGTTGCCCACAGTGCAAGGGGGAGAAGATTGTGCCGGAGAAGAAGGTTTTGGAAGTTATAGTGGAGAAGGGCATGCAGAATGGACAGA AAATTACCTTCCCTGGTGAAGCTGATGAAGCGCCGGATACAGTCACTGGTGATATTGTCTTCGTCCTTCAGCAGAAGGAACATCCAAAATTCAAGAGAAA GGGGGATGATCTTTTTGTGGAACACACTCTGCCTCTCACTGAGGCTCTCTGTGGCTTCCAATTTGTATTGACACACCTTGATGGCAGGCAGCTTCTTATC AAATCTAACCCTGGTGAAGCTGTCAAACCTGATTCATTCAAGGCAATCAACGATGAGGGTATGCCGATGTACCAAAGGCCATTCATGAAAGGGAAGTTGT ATATCCACTTCACTGTGGATTTCCCTGATTCTCTGACTCCTGATCAGGTTAAAGCAATAGAGACCATTCTGCCGAGGCCATCAAGCCAGTTGACAGATAT GGAGCTGGACGAGTGTGAGGAGACTACACTGCACGATGTTAACATTGAAGAGGAAATGAGGAGGAAGCAGCAGGCTCGTGAGGAAGCTTATGATGAGGAT GAGGAAATGCCTCATGGCGGTCAGAGAGTCCAATGCGCCCAGCAGTGA
AA sequence Show only first row Show all	>Potri.009G015700.1 pacid=42772124 polypeptide=Potri.009G015700.1.p locus=Potri.009G015700 ID=Potri.009G015700.1.v4.1 annot-version=v4.1 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEEALKEGMGGGGAGHNPFDIFESFFG GNPFGGGGSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLTRNVICSKCNGKGSKSGESMKCTGCQGSGMKVSIRQLGPSMIQQMQHPCNECKGTGETI SDKDRCPQCKGEKIVPEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLPLTEALCGFQFVLTHLDGRQLLI KSNPGEAVKPDSFKAINDEGMPMYQRPFMKGKLYIHFTVDFPDSLTPDQVKAIETILPRPSSQLTDMELDECEETTLHDVNIEEEMRRKQQAREEAYDED EEMPHGGQRVQCAQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.009G015700 [exp]	0	1	Pt-PM37.1
AT5G35320			unknown protein		Potri.018G132600 [exp]	2.44	0.9659
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	2.64	0.9692
AT1G66510			AAR2 protein family (.1.2.3)		Potri.017G123900 [exp]	2.64	0.9492
AT5G49220			Protein of unknown function (D...		Potri.010G000700 [exp]	3.46	0.9683
AT3G17611		ATRBL14	RHOMBOID-like protein 14 (.1.2...		Potri.010G004600 [exp]	4.12	0.9323
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Potri.006G262700 [exp]	6.24	0.9349
AT1G77840			Translation initiation factor ...		Potri.004G093600 [exp]	7.68	0.8926
AT5G63830			HIT-type Zinc finger family pr...		Potri.003G145100 [exp]	7.93	0.9404
AT4G34100			RING/U-box superfamily protein...		Potri.001G304100 [exp]	8.12	0.9508
AT3G12040			DNA-3-methyladenine glycosylas...		Potri.016G060000 [exp]	8.60	0.9095

Compare expression of checked genes

Potri.009G015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.