Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22100 515 / 0 RNA cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G216400 [exp] 684 / 0 AT5G22100 473 / 2e-167 RNA cyclase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013351 [exp] 583 / 0 AT5G22100 499 / 9e-178 RNA cyclase family protein (.1) Lus10004092 [exp] 576 / 0 AT5G22100 491 / 6e-175 RNA cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0290 [poplar] [flax] EPT_RTPC PF01137 [poplar] [flax] RTC RNA 3'-terminal phosphate cyclase CL0290 [poplar] [flax] PF05189 [poplar] [flax] RTC_insert RNA 3'-terminal phosphate cyclase (RTC), insert domain
Representative CDS sequence Show only first row Show all	>Potri.009G016000.1 pacid=42771491 polypeptide=Potri.009G016000.1.p locus=Potri.009G016000 ID=Potri.009G016000.1.v4.1 annot-version=v4.1 ATGGGAAAGGTAAGCTACAAGAAGCTAAGAGGTAGCCAAAACCTCCGTCAAAGACTGCTATTATCGACGCTTTCCGCCACTCCTGTCCAAGTCGAGGACA TTCGAGCCAATGACATGATGCCCGGCCTACGCCCCCATGAGGTCTCTCTCCTCCGCCTCCTCGAGAAGATTTCTGATGACTGTGTTGTCAAAATCAATGA AACCGGAACAAAGTTTCAATACAAGCCTGGGATTGTGATGGGTGGGAGACACCTTGTGCACGATTGTGGTGTAAGTCGAGCAATTGGGTATTTCTTGGAG CCATTGGTTGTTCTTGGGTTGTTTTCGAAGAAGCCCCTTTCGATAAGGCTCAAAGGAATTACAAATGATTCTAAGGACCCATGTGTTGACACTTTCCGTT CTGCTACCTTACCATTATTGAAGCAATTCGGAGTTCCTTCAGAAGGATTGGAACTGAAAATAGAAAGTCGTGGTGCTCCACCTCATGGTGGCGGAGAAGT TCTCTTATCAGTTCCCATTATTCAAAGTTTAACAGCAGTCACTTGGATTGATGAGGGAATGGTTAAGAGGATTAGAGGGGTGACTTTCTCAACCAGAGTC TCTTCTCAGTTTGAGAATACCATGATACATGCTGCTCGAGGAATCTTTAATCGTTTACTTCCTGATGTCCACATATTCACTGATCATAAAGCTGGTCAAC AAGCTGGAAATTCACCTGGTTATGGAATATCCTTGGTTGCGGAAACTACTTCTGGTTGTTTCATCACTGCTGATACTGCAGTTTCTTATGCACGAGCGGA TGATGGTGGAATGGAAGGTGAGAAACAAGAGCTGGTGCCTGCAGAAGATGTTGGTGAGCAAATTGCTTCTGTTCTCCTTAATGAAATTGAGCAAGGTGGA GTTGTAGATACAACACACCAGGGTTTGTTGTTTCTTCTTTGTGCATTATGCCCCCAAGATGTTTCAAAGATTCGTGTAGGAAAGCTAGGAACCCATGGAA TAGAAACACTAAGGCTCATCAGGGATTTTTTGGGTGTTAAATTCGTCATCAAGCCTGATCCATCAACAGGGACGGTTATACTCAAATGTGTGGGAAGTGG ACTTAAGAATCTTTCTAGAAAGAGTTCATGA
AA sequence Show only first row Show all	>Potri.009G016000.1 pacid=42771491 polypeptide=Potri.009G016000.1.p locus=Potri.009G016000 ID=Potri.009G016000.1.v4.1 annot-version=v4.1 MGKVSYKKLRGSQNLRQRLLLSTLSATPVQVEDIRANDMMPGLRPHEVSLLRLLEKISDDCVVKINETGTKFQYKPGIVMGGRHLVHDCGVSRAIGYFLE PLVVLGLFSKKPLSIRLKGITNDSKDPCVDTFRSATLPLLKQFGVPSEGLELKIESRGAPPHGGGEVLLSVPIIQSLTAVTWIDEGMVKRIRGVTFSTRV SSQFENTMIHAARGIFNRLLPDVHIFTDHKAGQQAGNSPGYGISLVAETTSGCFITADTAVSYARADDGGMEGEKQELVPAEDVGEQIASVLLNEIEQGG VVDTTHQGLLFLLCALCPQDVSKIRVGKLGTHGIETLRLIRDFLGVKFVIKPDPSTGTVILKCVGSGLKNLSRKSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22100			RNA cyclase family protein (.1...		Potri.009G016000 [exp]	0	1
AT5G15550			Transducin/WD40 repeat-like su...		Potri.017G093300 [exp]	1.00	0.9092
AT5G67630			P-loop containing nucleoside t...		Potri.016G096800 [exp]	2.00	0.8997
AT2G47790			Transducin/WD40 repeat-like su...		Potri.014G130600 [exp]	3.74	0.8334
AT3G02650			Tetratricopeptide repeat (TPR)...		Potri.001G361500 [exp]	3.87	0.8506
AT5G16930			AAA-type ATPase family protein...		Potri.011G143300 [exp]	4.58	0.8711
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	5.29	0.8693
AT4G15770			RNA binding (.1)		Potri.010G024400 [exp]	7.21	0.8109
AT5G64680			unknown protein		Potri.001G068500 [exp]	7.41	0.8352
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.001G440100 [exp]	7.74	0.8369
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	8.36	0.8481

Compare expression of checked genes

Potri.009G016000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.