Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22080 313 / 1e-108 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G65280 60 / 3e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G05750 42 / 0.0001 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G59610 41 / 0.0003 Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215800 [exp] 362 / 5e-128 AT5G22080 324 / 5e-113 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.019G083700 [exp] 50 / 4e-07 AT1G65280 479 / 2e-163 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.006G153700 [exp] 42 / 0.0002 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013354 [exp] 310 / 4e-107 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10004099 [exp] 310 / 4e-107 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10017919 [exp] 59 / 7e-10 AT1G65280 554 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014815 [exp] 59 / 7e-10 AT1G65280 522 / 4e-179 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004109 [exp] 43 / 0.0001 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 41 / 0.0005 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.009G016700.1 pacid=42771702 polypeptide=Potri.009G016700.1.p locus=Potri.009G016700 ID=Potri.009G016700.1.v4.1 annot-version=v4.1 ATGGGCGATACAAGATCCTCCGCCACCGCCTACGATGATTTGCTTCTCAAGAGCTTCTTTGCCGAAGTCAGCGAAGTCGAGCGAGATAACGAAGTCGCCA GGATTCTTTCATGCTTCAAGTTAAATCCATTTGAGTATCTAAATTTACCATTTGAAGCATCTCCAGAGGATCTCAAAAAGCAGTATCGTAAGTTATCTTT GCTGGTTCACCCTGATAAGTGCAAGCATCCGCAAGCGAAAGAAGCTTTTGCAGCATTAGCAAAAGCCCAGAAACTCTTACTTGATGAACAAGAAAGAGAT TATGTTCTTACCCAGGTTAATGCAGCTAAAGAAGAACTTCGAGCAAAGAGGAAGAAGCGGTTGAAGAAAGATACAGCCTCCAAAATAAAGTCATTGGTTG ATGAGGGAAAATATGATCAACAATATGAATGGTCGGAAGAGTTCCAGCAGGAGCTCAAATTGAAGGTTCGAGAAATTTTAACTGATCAAGAATGGCGGAG GAGGAAAATGCAGATGAGGATATCAGAAGAGGAAGGTAGATTGAAGAAGGATGAAGAAGAACAAAAGGAGACGTGGAAAAGAAAGCGTGAGCATGAGGAG CAGTGGGAAGGAACAAGAGAAAAGAGGGTTTCAAGCTGGAGAGATTTTATGAAGACGGGAAAGAAGGGGAAAAAGGGAGAGACTCGACCACCTAAGCTCA AGACTGAGGATCCCAACAAATCCTATGTTCAAAGGCCTGTAAAGCGAGGTTAA
AA sequence Show only first row Show all	>Potri.009G016700.1 pacid=42771702 polypeptide=Potri.009G016700.1.p locus=Potri.009G016700 ID=Potri.009G016700.1.v4.1 annot-version=v4.1 MGDTRSSATAYDDLLLKSFFAEVSEVERDNEVARILSCFKLNPFEYLNLPFEASPEDLKKQYRKLSLLVHPDKCKHPQAKEAFAALAKAQKLLLDEQERD YVLTQVNAAKEELRAKRKKRLKKDTASKIKSLVDEGKYDQQYEWSEEFQQELKLKVREILTDQEWRRRKMQMRISEEEGRLKKDEEEQKETWKRKREHEE QWEGTREKRVSSWRDFMKTGKKGKKGETRPPKLKTEDPNKSYVQRPVKRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.009G016700 [exp]	0	1
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	3.31	0.9049	Pt-NAC2.1,NAC049
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.013G025000 [exp]	4.24	0.9028	Pt-HAP5.3
AT3G19950			RING/U-box superfamily protein...		Potri.015G028400 [exp]	4.89	0.8985
AT5G59050			unknown protein		Potri.009G038600 [exp]	4.89	0.8915
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.002G061400 [exp]	6.92	0.9021
AT4G27020			unknown protein		Potri.001G424500 [exp]	10.24	0.8955
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.014G111900 [exp]	12.64	0.8884
AT3G07790			DGCR14-related (.1)		Potri.014G164200 [exp]	14.69	0.8817
AT3G22750			Protein kinase superfamily pro...		Potri.005G213200 [exp]	15.19	0.8801
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.008G003300 [exp]	21.42	0.8713	GCN4.3

Compare expression of checked genes

Potri.009G016700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.