Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37520 148 / 2e-41 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 140 / 2e-38 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 97 / 3e-23 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 94 / 4e-22 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083600 [exp] 247 / 4e-77 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 119 / 3e-31 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 119 / 3e-31 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 93 / 5e-22 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 91 / 5e-21 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.002G118600 [exp] 49 / 6e-07 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024419 [exp] 155 / 1e-43 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10025315 [exp] 153 / 4e-43 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10027738 [exp] 109 / 2e-27 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 103 / 2e-25 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 101 / 8e-25 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10042283 [exp] 53 / 3e-08 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10000368 [exp] 52 / 1e-07 AT5G63900 84 / 3e-17 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G016832.1 pacid=42770962 polypeptide=Potri.009G016832.1.p locus=Potri.009G016832 ID=Potri.009G016832.1.v4.1 annot-version=v4.1 ATGTGCTTTTCTTACTATAGGTGTCTTAATGTCATGCTCTCTTTCAGTGCGAAAAAGGAGTTTCATGTTGGTTGCTTGCGGGAAAGTGGACTATGTGATC TAGAAGAAATCCCCGAAGATAATTGGTTCTGCTGTCAGGACTGCAATAATATCTATGTAGCTCTCCGGAATTCTGTTTCTACTGGAGTGCAGAAAATTCC TGCTTCGCTGTTAAATATCATAAATAGAAAGCATGTCGAGAAAGGACTACTTGTTGATGAAGCTGCATATGATGTGCAGTGGCAAATTCTGACGGGAAAG AGTCGCAGCCGAGAAGATCTTTCATTGCTTTTCGGGGGCTGCTGCAATTTTTCGACTTTATGCAGGAGAAATATATTTGACCAGGAATTTGGGGGCATGT ATTGCGTGCTTTTGACTGTAAGGTTATTGTGCTCCCTGAATGTGGAACAACTGGTGCTACCAGCAGCTGAGACAATCTGGACAAGAAGATTTGGCTTCAG AAAGATGAGCGAGGGACAAGTAAGTTTTGTCTTTTATTCTTTAATGAATGGTCAGATTTATACTTCTTTTTATGAATCAATAAAGCGATGA
AA sequence Show only first row Show all	>Potri.009G016832.1 pacid=42770962 polypeptide=Potri.009G016832.1.p locus=Potri.009G016832 ID=Potri.009G016832.1.v4.1 annot-version=v4.1 MCFSYYRCLNVMLSFSAKKEFHVGCLRESGLCDLEEIPEDNWFCCQDCNNIYVALRNSVSTGVQKIPASLLNIINRKHVEKGLLVDEAAYDVQWQILTGK SRSREDLSLLFGGCCNFSTLCRRNIFDQEFGGMYCVLLTVRLLCSLNVEQLVLPAAETIWTRRFGFRKMSEGQVSFVFYSLMNGQIYTSFYESIKR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37520			Acyl-CoA N-acyltransferase wit...		Potri.009G016832 [exp]	0	1
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.006G269800 [exp]	12.88	0.7757
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.012G129300 [exp]	18.05	0.7711
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G064632 [exp]	21.02	0.7140
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.004G157900 [exp]	35.70	0.7595
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.002G060400 [exp]	44.15	0.7121
AT5G06450			Polynucleotidyl transferase, r...		Potri.013G049000 [exp]	53.06	0.6752
AT5G26330			Cupredoxin superfamily protein...		Potri.002G161300 [exp]	62.00	0.7117
					Potri.001G205601 [exp]	73.48	0.6487
AT4G02550			unknown protein		Potri.002G206500 [exp]	99.10	0.6569
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002501 [exp]	106.06	0.6589

Compare expression of checked genes

Potri.009G016832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.