Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27210 1588 / 0 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 1574 / 0 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT4G03080 613 / 0 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT1G03445 436 / 9e-139 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G27840 267 / 2e-81 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT5G59160 266 / 3e-81 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G39840 266 / 8e-81 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT1G64040 265 / 2e-80 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT3G46820 258 / 3e-78 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 255 / 5e-77 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215700 [exp] 1691 / 0 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.014G135800 [exp] 609 / 0 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.002G213300 [exp] 604 / 0 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.005G024100 [exp] 273 / 1e-83 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G045900 [exp] 267 / 5e-81 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 266 / 9e-81 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 263 / 6e-80 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 261 / 3e-79 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.008G060800 [exp] 261 / 3e-79 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008369 [exp] 1578 / 0 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10013357 [exp] 1573 / 0 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10004100 [exp] 1524 / 0 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10009783 [exp] 505 / 6e-165 AT2G27210 1281 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Lus10024773 [exp] 415 / 1e-133 AT4G03080 853 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10024772 [exp] 388 / 5e-128 AT4G03080 478 / 5e-165 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10004989 [exp] 261 / 5e-79 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10030163 [exp] 260 / 7e-79 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 260 / 9e-79 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 259 / 1e-78 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0186 [poplar] [flax] Beta_propeller PF07646 [poplar] [flax] Kelch_2 Kelch motif CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.009G016900.1 pacid=42771456 polypeptide=Potri.009G016900.1.p locus=Potri.009G016900 ID=Potri.009G016900.1.v4.1 annot-version=v4.1 ATGGACGTGGAGGCGTCGTTGGGGGCGACTGATCACGATCCGGCGGTGCAAGACGGTACTTCTTCGCCTACGGAAATGGACGGGGAACAGATAGGGGAGC AGTCGCCACAGCTGGCAGGATCTCAGGCAGCGTCTACGGCGGAAGTTACGGGTTCTAGTACTACTACAACGGCGCCGCAGCAGGTTGTGCAAGCGCAACA GCAGAGTCCGGTGGTGGGGCCGAGACACGCGCCTACGTATTCGGTGGTGAATGCGATTATAGAGAAGAAAGAGGATGGGCCTGGGCCTAGGTGTGGGCAT ACTTTGACTGCTGTGATTGCTGTTGGAGAAGAAGGCACGCCTGGGTATATTGGACCCAGGTTGATCTTGTTTGGTGGTGCCACGGCACTTGAGGGAAACT CTGCGTCTACAGGGACTCCTTCTTCGGCTGGGAGTGCTGGAATCAGACTAGCAGGTGCCACTGCTGATGTTCACTGTTATGATGTGCTAACGAATAAATG GTCTAGGATTACTCCATTTGGAGAACCACCCACACCAAGGGCTGCCCATGTGGCAACTGCTGTGGGAACTATGGTAGTAATTCAGGGTGGAATTGGTCCA GCTGGTTTGTCTGCTGAGGATCTTCATGTCCTTGACCTAACACAGCAACGGCCGCGGTGGCATAGAGTGGTTGTTCAAGGCCCAGGACCTGGGCCACGAT ATGGGCATGTGATGGCATTGGTGGGTCAAAGGTATCTCATGGCGATTGGAGGGAATGATGGAAAGCGGCCTTTGTCTGATGTGTGGGCCTTGGACACAGC TGCCAAACCTTATGAATGGCGTAAACTAGAACCGGAAGGGGAAGGGCCACCACCATGCATGTACGCAACTGCAAGTGCACGCTCAGATGGTCTGCTTCTG CTTTGTGGGGGGAGGGATGCGAACAGTGTGCCACTTGCAAGTGCATATGGGCTTGCTAAACATAGGGACGGCCGTTGGGAATGGGCAATTGCTCCTGGTG TCTCTCCATCTCCAAGATATCAGCATGCAGCAGTCTTTGTAAATGCCAGGCTCCATGTATCTGGAGGGGCACTTGGTGGTGGTCGCATGGTAGAAGATTC ATCAAGTGTTGCTGTGTTGGATACTGCAGCAGGAGTTTGGTGTGATACCAAATCTGTGGTTACCAGTCCAAGGACTGGCAGGTACAGTGCTGATGCTGCG GGTGGAGATGCTGCAGTTGAGTTAACTAGGCGTTGCAGGCATGCAGCCGCTGCAGTTAGTGACTTGATATTTATTTATGGTGGTTTACGTGGTGGGGTGT TGCTCGATGACCTACTTGTTGCTGAAGATCTGGCTGCTGCTGAAACAACAAGTGCAGCTTCCCACGCTGCAGCTGTAGCCGCTGCTTCCAATGTACAAGC TGGTAGGGTACCTGGAAGATACGGATTTGTAGATGAAAGAAATAGGCAAACCATGCCTGAAGCAGCACCTGATGGTTCTGTTGTGTTGGGGAGTCCAGTT GCTCCCCCAGTAAATGGTGACATGTACACTGATATAAGCACAGAGAATGCGATGCTCCCTGGACCCAGGAGAACAAACAAAGGTGTTGAGTATTTGGTTG AAGCATCAGCTGCAGAAGCTGAGGCTATCAGTGCCACTCTGGCTGCTGCCAAGGCACGACAAGTTAATGGAGAAGTTGAACTTCCTGATAGAGATCGTGG AGCAGAGGCTACTCCTAGTGGGAAACAAATATCTACTTTGATTAAGCCTGATTCTGCTGGATCGAACAATATTGTTCCTGCTGGAGTTCGGTTACATCAC AGAGCTGTTGTTGTTGCTGCTGAGACTGGTGGAGCTTTAGGTGGCATGGTTAGACAGCTTTCAATCGATCAGTTTGAAAATGAAGGCAGGCGGGTAAGTT ATGGGACCCCTGAGAGTGCAACTGCAGCTAGGAAACTATTGGATCGACAAATGTCCATCAATAGTGTGCCGAAAAAGGTCGTAGTACATCTCTTAAAGCC TCGTGGCTGGAAACCACCAGTTCGCCGTCAATTTTTCTTAGATTGCAATGAAATAGCAGATCTTTGTGACAGTGCTGAAAGGATATTTTCAAGTGAACCA AGCGTTTTACAGCTTAAGGCTCCTATCAAGATATTTGGTGATTTGCATGGGCAATTTGGGGATCTGATGCGCCTTTTTGATGAATATGGCTCACCTTCAA CTGCTGGTGACATCGCATATATCGACTATCTGTTCCTAGGAGATTATGTTGATCGGGGCCAGCACAGTCTGGAGACCATAACTCTTCTGCTTGCTTTGAA GGTTGAGTACCCCAACAATGTACATTTAATTCGTGGGAACCATGAAGCTGCAGATATCAATGCCCTTTTTGGCTTCCGGATTGAGTGCATTGAGCGAATG GGTGAGAGAGATGGAATTTGGGTTTGGCATCGGATAAATCGATTGTTCAACTGGCTTCCTTTGGCAGCACTAATTGAGAAGAAAATCATTTGTATGCACG GTGGTATTGGTCGCTCAATAAATCATGTGGAACAGATTGAGAGTCTACAACGTCCAATTACCATGGAAGCAGGCTCAATTGTGCTCATGGATTTGTTATG GTCCGATCCCACAGAAAATGACAGCGTGGAAGGACTGCGACCAAATGCTAGGGGTCCAGGGTTGGTAACATTTGGGCCTGATCGTGTTATGGAGTTCTGC AATAACAATGATCTTCAGTTGATTGTACGCGCCCATGAATGTGTGATGGATGGCTTCGAGCGTTTTGCTCAAGGACATTTGATTACACTTTTCTCTGCCA CCAATTATTGTGGTACTGCAAATAATGCAGGGGCAATCTTAGTTTTGGGAAGAGATCTTGTGGTGGTTCCCAAACTCATTCATCCTTTACCACCAGCAAT TTCATCACCAGAAGCTTCACCTGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAATAGACCTCCTACACCAACTAGAGGCCGTCCTCAA GTAATAACAAATGATCGGGGCTCCCTTGCTTGGATATAA
AA sequence Show only first row Show all	>Potri.009G016900.1 pacid=42771456 polypeptide=Potri.009G016900.1.p locus=Potri.009G016900 ID=Potri.009G016900.1.v4.1 annot-version=v4.1 MDVEASLGATDHDPAVQDGTSSPTEMDGEQIGEQSPQLAGSQAASTAEVTGSSTTTTAPQQVVQAQQQSPVVGPRHAPTYSVVNAIIEKKEDGPGPRCGH TLTAVIAVGEEGTPGYIGPRLILFGGATALEGNSASTGTPSSAGSAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGP AGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLSDVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLL LCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAA GGDAAVELTRRCRHAAAAVSDLIFIYGGLRGGVLLDDLLVAEDLAAAETTSAASHAAAVAAASNVQAGRVPGRYGFVDERNRQTMPEAAPDGSVVLGSPV APPVNGDMYTDISTENAMLPGPRRTNKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQISTLIKPDSAGSNNIVPAGVRLHH RAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVVVHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEP SVLQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERM GERDGIWVWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIESLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFC NNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPEASPERHIEDTWMQELNANRPPTPTRGRPQ VITNDRGSLAWI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.009G016900 [exp]	0	1
AT5G42140			Regulator of chromosome conden...		Potri.002G070300 [exp]	8.12	0.7589
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	9.16	0.7953
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	15.23	0.7935
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072800 [exp]	15.65	0.8029
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	16.97	0.8185
AT5G46070			Guanylate-binding family prote...		Potri.011G058500 [exp]	18.70	0.7577
					Potri.002G124250 [exp]	20.97	0.7856
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	21.72	0.8048
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.009G124200 [exp]	21.77	0.8107
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.014G046000 [exp]	22.13	0.7252

Compare expression of checked genes

Potri.009G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.