Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08410 756 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27200 723 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G52980 128 / 3e-31 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT3G07050 116 / 3e-27 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT4G02790 54 / 2e-07 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT5G66470 45 / 0.0001 RNA binding;GTP binding (.1) AT5G11480 44 / 0.0002 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22870 42 / 0.0006 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G402500 [exp] 139 / 7e-35 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.002G241100 [exp] 110 / 4e-25 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.005G209900 [exp] 59 / 3e-09 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.007G021900 [exp] 45 / 9e-05 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004103 [exp] 781 / 0 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 775 / 0 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028574 [exp] 129 / 2e-31 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 127 / 1e-30 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10023835 [exp] 99 / 3e-21 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10021017 [exp] 80 / 9e-16 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10018858 [exp] 71 / 2e-12 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10014672 [exp] 67 / 2e-11 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10006927 [exp] 65 / 5e-11 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10032427 [exp] 44 / 0.0003 AT1G30960 489 / 1e-171 GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.009G017000.2 pacid=42772911 polypeptide=Potri.009G017000.2.p locus=Potri.009G017000 ID=Potri.009G017000.2.v4.1 annot-version=v4.1 ATGGGAAAGAACGAGAAAACACGACTTGGAAGAGCACTAGTAAAGCACCACAATCAAATGATTCAAGAATCCAAAGAAAAAGGCCGGTATTACAAATCAC AACACAAGAAAGTTCTCGAATCCTTCACTGATGTCACTGAAATAGACGCCGTCATGGAACAAGTCGACGAAGGGGAACTTTTCTCCTCCTCCTCCTCCTC CGTCCACCATCCCGTCCCCAACCTCCTCATCAACCTGGACACGGGGTCTGGAGTGAGTGATATGACGGCAGAAGAGAAGAGAGAGAAGCAGAAGAAAGAG GAGGCGCTGCATGCTAGTAGTCTTCGAGTTCCTCGCAGGCCGCCGTGGAATGCTGGAATGTCGGTGGAAGAGCTAGATGCTAATGAAAAGCAAGCTTTTT TAACCTGGCGGCGGAGTCTTGCTAGCCTTGAGGAGAATGAGAACCTTGTTCTTACTCCATTTGAGAAGAACCTGGATATATGGAGACAGCTTTGGCGAGT GCTTGAACGCAGTGATTTGCTGGTAATGGTTGTTGACGCTCGAGACCCCTTGTTCTACCGCTGCCCTGATCTTGAGGCATATGCACGGGAGATTGATGAA CACAAAAGGACCCTACTCCTTGTAAACAAGGCTGATCTTTTACCTTTTTCAGTCAGGCAGAAATGGGCAGATTATTTTCGCCATCTTGGGATTCTGTTTC TATTCTGGTCAGCCAAGGCTGCTACTGCAGTTCTTGAGGGGAAAATACTACAGGGCCCCTGGAATGAACAAGCTACCCTGCAAGAGATGGATGACCCTGA TACAAAAATTTATGGAAGGGATGAGCTTTTGGCCCGTTTACAGTCTGAGGCAGAAACAATAGTCAGAATCAGGAGCAAATCAGTCTCCAGTGGCTCAGGC CCATCTAATTTTCAGTCTTCTGGCGGAAAGTTTGCAGGCAATTCAGCTCCCAAGCATGTGGTAGTGGGTTTTGTTGGGTATCCGAATGTGGGTAAAAGCT CCACAATCAATGCCTTGGTGGGCCAGAAGCGAACAGGAGTCACCTCTACTCCGGGGAAGACAAAGCATTTCCAAACACTCATAATGTCTGAGAAGTTGAC CTTATGTGATTGCCCAGGATTAGTTTTCCCTTCCTTTTCAAGCTCGAGATATGAAATGATTGCTTCAGGGGTGTTGCCAATTGATCGAATGACAGAGCAC AGGGAGGCTGTGCAGGTTGTAGCAAACCGAGTTCCAAGGCGTGTCATTGAGGATGTCTACAAAATAAACCTGCCAAAACCTAAGCCATACGAGCCTCAGT CCCGGCCTCCTTTGGCATCAGAATTATTGAGGACATATTGTGCTTCTCGAGGGTATGTAGGATCCAGTGGATTGCCTGATGAAACCAGAGCTGCCCGTCA AATTCTGAAGGATTACATCGATGGGAAGCTAACTCACCATGAGATTCCCCCGGGAATATCTGATGAGGAAGGAAGCGATCAAGATGATGCGGGTTCCAGC TTGTCCGAAACACACCAGTCAGATTCATCTGATACTGAAAACCCAGCTGAAAATGATGGCAAAAATACACCTGCCCTTGAGCATGTGCTGGATGATCTTA ATTCATTTGACATGGCCAATGGACTTGCCCACAAGAAGGTTACCGTTAAGAAGCCAAGTGCCTCAGCCTCAGCCTCGCACAAGCATCACAAGAAGCCTCA GAAGAAAAAGGATCGATCATGGAGGATTGAAAATGATGGTGGTGATGGAATGCCGGTTGTAAGAGTCTTCCAGAAATCGGTGAACACAGGTCCTCTCAAG ACTGGGTAA
AA sequence Show only first row Show all	>Potri.009G017000.2 pacid=42772911 polypeptide=Potri.009G017000.2.p locus=Potri.009G017000 ID=Potri.009G017000.2.v4.1 annot-version=v4.1 MGKNEKTRLGRALVKHHNQMIQESKEKGRYYKSQHKKVLESFTDVTEIDAVMEQVDEGELFSSSSSSVHHPVPNLLINLDTGSGVSDMTAEEKREKQKKE EALHASSLRVPRRPPWNAGMSVEELDANEKQAFLTWRRSLASLEENENLVLTPFEKNLDIWRQLWRVLERSDLLVMVVDARDPLFYRCPDLEAYAREIDE HKRTLLLVNKADLLPFSVRQKWADYFRHLGILFLFWSAKAATAVLEGKILQGPWNEQATLQEMDDPDTKIYGRDELLARLQSEAETIVRIRSKSVSSGSG PSNFQSSGGKFAGNSAPKHVVVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIMSEKLTLCDCPGLVFPSFSSSRYEMIASGVLPIDRMTEH REAVQVVANRVPRRVIEDVYKINLPKPKPYEPQSRPPLASELLRTYCASRGYVGSSGLPDETRAARQILKDYIDGKLTHHEIPPGISDEEGSDQDDAGSS LSETHQSDSSDTENPAENDGKNTPALEHVLDDLNSFDMANGLAHKKVTVKKPSASASASHKHHKKPQKKKDRSWRIENDGGDGMPVVRVFQKSVNTGPLK TG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08410			P-loop containing nucleoside t...		Potri.009G017000 [exp]	0	1
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Potri.002G185400 [exp]	2.23	0.8626
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Potri.001G370300 [exp]	5.19	0.8358
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.019G034300 [exp]	10.39	0.8477
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.010G203400 [exp]	12.24	0.8418
AT5G64460			Phosphoglycerate mutase family...		Potri.002G108500 [exp]	15.23	0.8378
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.012G105900 [exp]	15.42	0.8254	CLPC.1
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.006G275300 [exp]	18.73	0.8143	FZF.2
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	19.36	0.8420
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.002G212800 [exp]	19.89	0.8090
AT5G40570			Surfeit locus protein 2 (SURF2...		Potri.001G342400 [exp]	20.49	0.8284

Compare expression of checked genes

Potri.009G017000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.