Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35940 310 / 5e-95 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT4G34610 278 / 8e-85 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 271 / 7e-83 HD BLH7 BEL1-like homeodomain 7 (.1) AT1G75410 261 / 2e-78 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G19700 256 / 2e-76 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G27220 248 / 1e-74 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT4G36870 243 / 1e-69 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 234 / 1e-67 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT5G41410 224 / 7e-64 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT5G02030 199 / 4e-55 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G216600 [exp] 1052 / 0 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 628 / 0 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 592 / 0 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.004G159300 [exp] 303 / 2e-92 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 291 / 3e-88 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 268 / 1e-79 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.005G129500 [exp] 251 / 3e-72 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.001G100800 [exp] 247 / 8e-72 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.007G032700 [exp] 249 / 1e-71 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029405 [exp] 420 / 2e-137 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 420 / 4e-137 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 325 / 3e-102 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10028802 [exp] 295 / 2e-89 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 292 / 1e-88 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 290 / 5e-88 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10010633 [exp] 257 / 3e-76 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10021270 [exp] 251 / 2e-73 AT2G35940 127 / 2e-65 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10033192 [exp] 246 / 3e-72 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10016790 [exp] 219 / 1e-63 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.009G017400.7 pacid=42771150 polypeptide=Potri.009G017400.7.p locus=Potri.009G017400 ID=Potri.009G017400.7.v4.1 annot-version=v4.1 ATGGCAACGTACTTTCATGGAAGCTCAGAAATCCAAGCAGCAGCTGCACCATCTGATGGGATCCAGACACTTTATCTTATGAACCCTAACTACCTCTCTT CTTACTCTGACTCGACTCAACAGCAGCACCAACAACAGCCCCCTAACATGATCTTCTTTAACCCCAGTAGTAGTACTGCCGCTTCCAATAATGGCCTTCA CACCGGAAACCTTCCTCATGGCCCCCCGCAGAACCACCACTTTGTCGGCATCCCACTTGCTGCACCCTCCTCCAATATCACTTCTCTTACTCCAGACAGT CACAGCCGTCCGTCCCTACATGGGGTTGTCCCTAGTCATGTTCACTATAACATTTGGGGTTCAATAGATCAGAATTCGGTCGCAACAGCCTGCGAGTCCA GTGCGGCCAATGATGTCGTGTCGCCGCAGGTGGGTTTTCGGAGGCCGGTGGCGGTGTCTCCTGGAAGGCAAGGGTTATCTCTAAGCCTTTCGTCTCAGCA AGCACCGACACCACCGACACCGTATAATAGGGCTATAGGCAATAAACATCATGAGATTCAAGCATTGCATCCTCATGTTTCGGTTGTGTCTTCAGGTGAT GAAATCAGAGTTTCTGGGAACTCTCCGTCGTCTGTTTCGGCAGTGTCGAATGGGGTTTCCGGTTTGCAAAACATGGTTTTGGGATCCAGGTACCTGAGAG CTACACAGGAGTTGCTTGATGAAGCTGTTAATGTTGGAAAAGACCTAATAAAGAGTGGCTTGATAGAAGGGAGTTCTAAAGAGAAGATGAAGATGACTAA AGAATCTATAACTGGAGATGGATCTAGTGGTGGTGAAGCTTATGCTGCTAATCGTGGAGCTGAGCTGACGACAGCCCATAGGCAGGAGCTGCAAATGAAG AAGGGAAAGCTTGTAAACATGCTCGACGAGGTGGAACAAAGATACAGGCAATACCACCACCAAATGCAAGTAGTAGTTTCCTCGTTCGAGCAAGCATCAG GATTTGGTGCAGCGAAATCATACACTGCCCTGGCATTACAGACTATCTCAAAGCAATTCAGGAGTCTTAAAGACACAATTTCTTCGCAAATCAGAGCCGC AAGCAAGAGTTTGGGTGAAGAGGATTGCATAGGAGCAAAGGTTGAAGGTTCAAGACTAAGGTACGTGGATCATCAGCTTCGACAACAGCGAGCACTACAA CAATTGGGAATGGTCCAACATAATGCTTGGAGACCCCAGAGAGGATTGCCGGAACGTGCTGTTTCCGTTCTTCGCGCCTGGCTCTTTGAGCACTTCCTTC ACCCATATCCCAAAGATTCTGATAAGCACATGCTTGCAAAACAAACAGGGCTTACTAGGAGCCAGGTGTCTAATTGGTTTATAAATGCTCGGGTTCGGCT GTGGAAGCCAATGGTTGAGGAAATGTACGCCGAGGAAATCAAGGAGCAAGAGAAAACTGGTTCTGAGGAGAATGCAAATAAAAATGAGAACAAGGAGTCG AGGTCTCATTCTAGCGCACCAGGAGAGAGCAGTACACTTCAAATGGATCAACGTAAGGGAGTACTTCACTCGAAACAACCCGAAAAACCCAGGAACCAGA ATGCTTCTCCTCCAAGATTTTCATACCCCGCAATCTCAATGTCTCCCATGGGAGCACCCCTTCAACAGCAAGCTGGTTTTACCCTTATTGGACCAGCTGA AATGGCAGGCGCCATTTCTCATAGAAGCTCAAAGAAACCGAGTAGTCATGACATGCAGAATTCTCCAAGCAGTATCCTCTCCATGGACATGGACGTGAAA CAAGGTGAGACAAGTAGGGAAATCAGTGCGAATTTTGGTGGTGAAAGGTTAATCAAGGATGGCTATCCTTTAATAACTAGCAGTGGTGGATTTGGAGCAT ATCCAATGGGAGATCTTGGGAGGTTTAACCTTGAGCAGATGGCACCAAGATTTAGTGGAAACAGTGTTTCCCTTAGTCTTGGTCTACCACATTGTGAGAA CCTTTCTCTTTCAGGAACTCAACAAAACTACCACTCGAACCAGAACATTAATCAGCTCGGTGGAAGAAGACTAGAAATTGGAAGCGGTACTGAACCTGAC TTTTCTGGGATTAACACCTCACAAAATTCTCACTCCAGCACTGGTTTTGAGAGCATTGAAATGCAAAACAGAAAGAGGTTTCCTGCACAATTATTGCCAG ATTTTGTGGCCTGA
AA sequence Show only first row Show all	>Potri.009G017400.7 pacid=42771150 polypeptide=Potri.009G017400.7.p locus=Potri.009G017400 ID=Potri.009G017400.7.v4.1 annot-version=v4.1 MATYFHGSSEIQAAAAPSDGIQTLYLMNPNYLSSYSDSTQQQHQQQPPNMIFFNPSSSTAASNNGLHTGNLPHGPPQNHHFVGIPLAAPSSNITSLTPDS HSRPSLHGVVPSHVHYNIWGSIDQNSVATACESSAANDVVSPQVGFRRPVAVSPGRQGLSLSLSSQQAPTPPTPYNRAIGNKHHEIQALHPHVSVVSSGD EIRVSGNSPSSVSAVSNGVSGLQNMVLGSRYLRATQELLDEAVNVGKDLIKSGLIEGSSKEKMKMTKESITGDGSSGGEAYAANRGAELTTAHRQELQMK KGKLVNMLDEVEQRYRQYHHQMQVVVSSFEQASGFGAAKSYTALALQTISKQFRSLKDTISSQIRAASKSLGEEDCIGAKVEGSRLRYVDHQLRQQRALQ QLGMVQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYAEEIKEQEKTGSEENANKNENKES RSHSSAPGESSTLQMDQRKGVLHSKQPEKPRNQNASPPRFSYPAISMSPMGAPLQQQAGFTLIGPAEMAGAISHRSSKKPSSHDMQNSPSSILSMDMDVK QGETSREISANFGGERLIKDGYPLITSSGGFGAYPMGDLGRFNLEQMAPRFSGNSVSLSLGLPHCENLSLSGTQQNYHSNQNINQLGGRRLEIGSGTEPD FSGINTSQNSHSSTGFESIEMQNRKRFPAQLLPDFVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.009G017400 [exp]	0	1
AT4G14605			Mitochondrial transcription te...		Potri.017G067600 [exp]	10.53	0.8725
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.002G055400 [exp]	10.67	0.8284
AT3G61800			unknown protein		Potri.002G171600 [exp]	12.16	0.8148
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G124677 [exp]	13.85	0.8646
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.008G195200 [exp]	15.42	0.8178
AT5G14370			CCT motif family protein (.1)		Potri.001G339200 [exp]	26.07	0.8284
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G017100 [exp]	28.84	0.8351
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Potri.012G056100 [exp]	32.55	0.8559
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	34.72	0.8291
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	34.77	0.8136

Compare expression of checked genes

Potri.009G017400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.