Plant FIBer expression Database

Potri.009G017600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27228 56 / 3e-13 CPuORF6 conserved peptide upstream open reading frame 6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G216800
[exp]
64 / 2e-16 AT2G27228 56 / 3e-13 conserved peptide upstream open reading frame 6 (.1)
Potri.006G090033
[exp]
33 / 0.0004 AT2G31280 42 / 6e-08 conserved peptide upstream open reading frame 7 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013348
[exp]
50 / 2e-09 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2)
PFAM info
Representative CDS sequence
>Potri.009G017600.1 pacid=42772917 polypeptide=Potri.009G017600.1.p locus=Potri.009G017600 ID=Potri.009G017600.1.v4.1 annot-version=v4.1
ATGGCTTGCAAGAGAATGGTCATATCAGTGAACTTGGATCCAGAGAGAAAGAGGAGTGGTGGTCTTAGAACTAAACAGGCTGGGAGAGGATCCTGTCGTG
GAAGTTAG
AA sequence
>Potri.009G017600.1 pacid=42772917 polypeptide=Potri.009G017600.1.p locus=Potri.009G017600 ID=Potri.009G017600.1.v4.1 annot-version=v4.1
MACKRMVISVNLDPERKRSGGLRTKQAGRGSCRGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27228 CPuORF6 conserved peptide upstream ope... Potri.009G017600
[exp]
0 1
AT2G31280 bHLH bHLH155 ,CPuORF... conserved peptide upstream ope... Potri.006G090033
[exp]
3.00 0.9014
Potri.010G080633
[exp]
4.24 0.9001
AT2G27228 CPuORF6 conserved peptide upstream ope... Potri.001G216800
[exp]
5.74 0.8951
AT1G58122 CPuORF45 conserved peptide upstream ope... Potri.007G113150
[exp]
6.63 0.8934
Potri.005G187000
[exp]
6.70 0.8889
AT1G72890 Disease resistance protein (TI... Potri.011G013225
[exp]
7.07 0.8216
AT5G14280 GeBP DNA-binding storekeeper protei... Potri.010G056000
[exp]
8.48 0.8700
AT2G16880 Pentatricopeptide repeat (PPR)... Potri.008G044050
[exp]
9.16 0.8529
AT2G31280 bHLH bHLH155 ,CPuORF... conserved peptide upstream ope... Potri.005G222550
[exp]
9.48 0.8285
AT5G50011 CPuORF37 conserved peptide upstream ope... Potri.017G047932
[exp]
10.86 0.6819

Potri.009G017600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.