Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27240 452 / 1e-155 Aluminium activated malate transporter family protein (.1) AT1G08440 451 / 3e-155 Aluminium activated malate transporter family protein (.1) AT1G08430 431 / 1e-147 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT3G11680 398 / 1e-134 Aluminium activated malate transporter family protein (.1) AT4G00910 295 / 2e-94 Aluminium activated malate transporter family protein (.1) AT4G17970 268 / 1e-83 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 260 / 1e-80 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 254 / 3e-78 Aluminium activated malate transporter family protein (.1) AT3G18440 216 / 4e-63 ATALMT9 aluminum-activated malate transporter 9 (.1) AT2G17470 208 / 5e-61 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217200 [exp] 754 / 0 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 695 / 0 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 681 / 0 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.001G217300 [exp] 664 / 0 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 519 / 0 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 487 / 6e-170 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 471 / 2e-163 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 466 / 2e-161 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 334 / 9e-110 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021272 [exp] 473 / 4e-164 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 470 / 5e-163 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001846 [exp] 419 / 1e-143 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 378 / 1e-127 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 284 / 1e-90 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 285 / 2e-90 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 265 / 2e-82 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 256 / 3e-79 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 255 / 1e-78 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013347 [exp] 229 / 8e-71 AT3G11680 232 / 6e-72 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF11744 [poplar] [flax] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Potri.009G017800.1 pacid=42772830 polypeptide=Potri.009G017800.1.p locus=Potri.009G017800 ID=Potri.009G017800.1.v4.1 annot-version=v4.1 ATGGAAATCGGATCTGCAAGCGGTGACAAGGCCGGTGTTTTCACTCAAGGGCGACGGTGGCTCAATGCCTTGCCTGTGAAGTTCAAAGATAAGGTGGCTG ATACGGCTACGAACATAAAGAAGGTTGGACAAGATGATCCGAGAAGAGTTATTCATTCACTAAAAGTAGGGCTTGCACTTGCATTGGTATCAATATTCTA CTACTACCAGCCACTCTACAGTAATTTTGGCGTCACTGCAATGTGGGCTATTATGACTGTTGTAGTTGTCTTTGAATTCTCTGTGGGGGCTACTCTTGGA AAAGGACTGAACAGAGGAATGGCAACACTACTGGCTAGTGCACTCGGCGTTGGAGCACATCACCTAGCAAACCTATCTGGACATGTAGGAGAACCCATAC TACTTGGTTCCTTAGTCTTTCTACAAGCTGCAATATCAACATTCTTACGGTTCTTTCCAAAAATTAAAGCAAGATATGATTATGGGCTGCTAATATTCAT ATTGACCTTCTCTTTGATATCGATATCGGGCTTTCGAGACGATGAAATATTAGAGTTAGCACATAAAAGAGTATTAACCATCTTCGTAGGTGGCTTTGCT TGTGTCATCATTTCTATTGTGGTTTTCCCTGTGTGGGCTGGTGAAGATCTTCACAATCTGATTGCTCTCAACATTGAAAAGCTTGGTAACTTCTTGGAAG GATTTGGTGATGAATACTTCAAAAGAACAGGGGATGCAGAGTCTAAAGACGACAAGAAATATCTGGAAGGATACAAGAGTGTTTTGAATTCAAAAACCGG TGAAGAATCCTTGGCTAATTTTGCTGCATGGGAGCCAGGGCATGGTAGGTTCCAGTTTCGGCATCCATGGAAACAGTACCTAAAAGTTGGAACTCTGGCT CGTGAATGTGCCTACAGAATTGAAGCATTAAATGGATACTTAAATGCCGACATTCAGGCATCATCAGAAGTTAGAAGCAGAATTCAGGAAGCATGCACAA ACGTGAGCATAGAATCTGGAAAAGCACTGAAGGAACTGTCATTAACAATGAAAAAAATGGTACAGCCATCTTCTGCAGATTCCCATATAGAAAATGCAAA ATCTGCCGCCAAAAACCTGAAATCTTTACTCAAATCAGGCCTATGGGAAGACACTGACCTGCTGAAAGTCATACCAGGGATTACAGTGGCTTCAATCCTT AATGAAGTGGTCAAATGCACTGAAAACATTGCTGAATCCGTCCATGAACTCGCTTCCATAGCTCAATTTAAGAGTGTAGAACGTACTGTATCACCAGAAA AGTTGCATTCAGGACAACCACAGAATATAAAATCAGCTCAGATGGTCAATTACTCCCATGTTGTCGTCAATGTTAGAGAATCAACCATGGCTGCTTCACC AAGTGAGATTTCTTCTGCGCCAAAGGCTATCAAGCACAATATGGAAGTGTAA
AA sequence Show only first row Show all	>Potri.009G017800.1 pacid=42772830 polypeptide=Potri.009G017800.1.p locus=Potri.009G017800 ID=Potri.009G017800.1.v4.1 annot-version=v4.1 MEIGSASGDKAGVFTQGRRWLNALPVKFKDKVADTATNIKKVGQDDPRRVIHSLKVGLALALVSIFYYYQPLYSNFGVTAMWAIMTVVVVFEFSVGATLG KGLNRGMATLLASALGVGAHHLANLSGHVGEPILLGSLVFLQAAISTFLRFFPKIKARYDYGLLIFILTFSLISISGFRDDEILELAHKRVLTIFVGGFA CVIISIVVFPVWAGEDLHNLIALNIEKLGNFLEGFGDEYFKRTGDAESKDDKKYLEGYKSVLNSKTGEESLANFAAWEPGHGRFQFRHPWKQYLKVGTLA RECAYRIEALNGYLNADIQASSEVRSRIQEACTNVSIESGKALKELSLTMKKMVQPSSADSHIENAKSAAKNLKSLLKSGLWEDTDLLKVIPGITVASIL NEVVKCTENIAESVHELASIAQFKSVERTVSPEKLHSGQPQNIKSAQMVNYSHVVVNVRESTMAASPSEISSAPKAIKHNMEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27240			Aluminium activated malate tra...		Potri.009G017800 [exp]	0	1
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Potri.001G347200 [exp]	5.91	0.8520
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.016G068132 [exp]	18.38	0.8672
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.006G221400 [exp]	19.54	0.7707
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G007200 [exp]	23.87	0.7928
AT5G67060	bHLH	HEC1, bHLH088	HECATE 1, basic helix-loop-hel...		Potri.002G125000 [exp]	28.03	0.8592
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051300 [exp]	36.16	0.8467
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Potri.014G145700 [exp]	36.98	0.8255
AT3G50390			Transducin/WD40 repeat-like su...		Potri.006G239600 [exp]	50.19	0.8380
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Potri.001G097600 [exp]	52.85	0.7389
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.018G099201 [exp]	56.08	0.8312

Compare expression of checked genes

Potri.009G017800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.