Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21160 660 / 0 LA RNA-binding protein (.1.2.3) AT4G35890 97 / 2e-20 winged-helix DNA-binding transcription factor family protein (.1) AT5G66100 96 / 2e-20 winged-helix DNA-binding transcription factor family protein (.1) AT5G46250 67 / 1e-11 RNA-binding protein (.1.2.3) AT2G43970 52 / 1e-06 RNA-binding protein (.1.2) AT3G19090 44 / 0.0006 RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G220100 [exp] 1320 / 0 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.007G063600 [exp] 112 / 1e-25 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G243600 [exp] 110 / 4e-25 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G109400 [exp] 109 / 2e-24 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.011G080700 [exp] 76 / 2e-14 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.017G007400 [exp] 52 / 1e-06 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.007G144800 [exp] 50 / 4e-06 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.009G106500 [exp] 45 / 0.0001 AT3G19090 348 / 1e-116 RNA-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037431 [exp] 836 / 0 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10041277 [exp] 684 / 0 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10014254 [exp] 122 / 4e-29 AT4G35890 246 / 6e-76 winged-helix DNA-binding transcription factor family protein (.1) Lus10025953 [exp] 121 / 5e-29 AT4G35890 226 / 8e-69 winged-helix DNA-binding transcription factor family protein (.1) Lus10025951 [exp] 120 / 2e-28 AT4G35890 264 / 4e-82 winged-helix DNA-binding transcription factor family protein (.1) Lus10023315 [exp] 71 / 2e-12 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 69 / 4e-12 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10025608 [exp] 50 / 7e-06 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 49 / 1e-05 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10025954 [exp] 42 / 0.0001 ND 43 / 7e-06
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05383 [poplar] [flax] La La domain
Representative CDS sequence Show only first row Show all	>Potri.009G018100.1 pacid=42771021 polypeptide=Potri.009G018100.1.p locus=Potri.009G018100 ID=Potri.009G018100.1.v4.1 annot-version=v4.1 ATGGTGATGGCGGAAAATGAGAGTGGAGATGATCAAAAGAGTAGTAGTACGGTCGGACCGAAGTCGCCGTGGAAGTCTCCGGTGGTCGCTGATGCTCCGG TGATGGGCGCCGCCGAGTTTTGGCCTGCTCTTTCTGATGCTCAACAACAACAGCAACAACATCGGTCGAAGCTGACTGATTCTGCTTCTAAGACGCCGCC GCAGCCGCCATTGATGGTTGCTGGTGGTGGTGATAAGGCTGCGCCACCGGCAGCTTCACCTCGGGGATCAGCTGGGCAGCATAAGTCACATGGATCTGGA TATTCAAATACATCAAATAAACATTCATCATCAAGACATCAAAAATCAGGATCTAAGCGCAATCCTAATGGGGCACATCCTTTCTCCGTGCCATTCCCTT ACCAACAACCAGCCATGTCACCAGTTTTTCCAGCAATGGCACCTCCCCCACACATTGCTGTTTCTGGCTATCCATATCAACCTGGCCCTCCACCTTTTCC CACAGTTGAAACTCATTTGATGAAGTCTGGATCAGAGACGGGACCCCCTATGCAACCTTTTGCTCCATCTATAAATGTCCAGCCTCCACCTAGAGGGGAT CCCAATGCTTATGCTGTTAACTTTCCAAATCGAAGACCTAACATGCAAGACTCTGGTGGCCATTTGAATCCAACATGGCATCATCAACGGGCATTTGGGT CCAGAGATAACATCCCGCTGCAACAGGTTATGGGACCAAGGCCATTGGTAAGGCCACCTTTTTTTGCCGCACCTCCAGGGTACATGGTCGGTCCAACATT CCCTGGACCACCACCTATATGCTACGTATCTGTTGCACCTCCAGGCTCTCTCAGGGGACCTCAACCTTCCTGTTTTGTTCCATATCCAATTAATTCAGGG GCTCCTGTGCTTTCCCAAGAGACACTAGCTTTGAGGGCTAGCATTGCAGGACAAATAGAGTATTATTTCAGCGATGAAAATCTGCAGAATGACCATTATC TAATATCCTTAATGGATGATCAAGGATGGGTTCCAGTATCCACGATTGCTGAATTTAAAAGGGTTAAGAAAATGACTCTGGACATATCATTTATCCTTGA TGCGCTGCAGTGTTCTGGCTCTATAGAAGTGCAGGGTGACAAGGTTCGGAAACGAGATGATTGGTCAAAGTGGATTCCAGCTTCTTCTCAGCAGGCAGTG TCACCGAAGGCTCAGACTTCTGAGGCCCAAGCTGGAGAGAATGCTGAGGAAGATGACACAATCAGTGTCTCCAAAGGAAGCGCTGGATTTGCTTCGCACA CTACAGTCAAGGCAGTAAACAAATTGTCAAATGGAGATGCTGGGAAAATGGAAGTTGATGGGAAGTCTATCCTGTTTAAAGCTGGAAAACCAGGATGTGA TGGGAATTCAGAGCTTGGTGCTTGTCATAGCACTCCCCATTTGGACCGTGCACAAGGAACTGGGCCTCCGACATTCAATTATCATGGGACTGAAGGGATG GAAGATGCACAGAATCTTGCTGATCTTTCAAGTGATTTTGCCAACACATTTATGCTTGATGAAGAGCTGGAGCTTGAGCAGAAAACACTCAAGAATGATG AATGTTCTCCAGTTAGAAGGATTGATGATGAAGAGGATGAGATGGTGGTCCATGACCAGGATGTTCAAAGACTTGTGATTGTCACCCAGAATAGTAGAGT GGGAGAAGGATCTACCAAATCTGGTGGTAAAGAATCAAAATCTATTTCATCCGAGCTTGCTTCTGCAATAAACGATGGGCTATACTTCTATGAGCAGGAG CTCAAAACTAAGCGATCTAATCGTAGAAAGAATGCTTCTACCTACGAGAACAGAGATGGATATTTAAGACTGACAAACAGTGCTTCACTAATATCAAAGT CAAAGGCTGGTGAAAATTCTGCTGCAAGCTGTGGCCATGAAGAGTCGGGAAGCTCCAACAACACAAGGAAACAAAATAAAGTTCCCAAGCAGCAGTCATA CCATAAGCAACGGTTCTTCTCCAGCAACTCTAGGAATCATGGCACTGGTCGCAATAATTTTGGAATCATATCAGAAAGTCCACCAAGCAATTCAGTTGGA TTTTTCTTTAGTTCTACACCTCCTGAAAATCACGGACTCAGATCTTCAAAGTTGAGTGTTTCACCCCACAGCATGCTACTGGGCAGCAGTCCACCAGTAG GTTCCATGCCAAAGTCATTCCCACCGTTTCAGCATCCGAGCCATCAACTCTTAGAAGAAAATGGCTTTAAACAGCAGAAGTACTTGAAGTATCGTAAGCG GTGCTTAAATGATAGAAAGAAGATGGGAATAGGCTGCAGTGAGGAAATGAATACACTGTATAGGTTTTGGTCGTACTTCCTTAGAAACATTTTTGTCCCT TCTATGTATAATGAGTTCCAAAAATTTGCGCTGGAAGATGCATCTGCTAATTACTATTATGGGATGGAGTGCCTTTTCAGGTTCTATAGTTATGGCTTGG AGAAGGAGTTCAGAGATGACTTGTACAAGGACTTTGAAGAACTCACCCTTGACTTCTGTCGTAAAGGCAACATTTATGGCCTTGAAAAATACTGGGCCTT CCACCATTATTGCCGTCTAGGTGACAAAGAACCAAAGAAACATCCAGAATTGGAGAGGTTACTGAGAGATGAATATCGGACCTTGGAGGACTTCCGTGCC AAAGAGAAGTCCATGAAGAAGGACAGTCATTAG
AA sequence Show only first row Show all	>Potri.009G018100.1 pacid=42771021 polypeptide=Potri.009G018100.1.p locus=Potri.009G018100 ID=Potri.009G018100.1.v4.1 annot-version=v4.1 MVMAENESGDDQKSSSTVGPKSPWKSPVVADAPVMGAAEFWPALSDAQQQQQQHRSKLTDSASKTPPQPPLMVAGGGDKAAPPAASPRGSAGQHKSHGSG YSNTSNKHSSSRHQKSGSKRNPNGAHPFSVPFPYQQPAMSPVFPAMAPPPHIAVSGYPYQPGPPPFPTVETHLMKSGSETGPPMQPFAPSINVQPPPRGD PNAYAVNFPNRRPNMQDSGGHLNPTWHHQRAFGSRDNIPLQQVMGPRPLVRPPFFAAPPGYMVGPTFPGPPPICYVSVAPPGSLRGPQPSCFVPYPINSG APVLSQETLALRASIAGQIEYYFSDENLQNDHYLISLMDDQGWVPVSTIAEFKRVKKMTLDISFILDALQCSGSIEVQGDKVRKRDDWSKWIPASSQQAV SPKAQTSEAQAGENAEEDDTISVSKGSAGFASHTTVKAVNKLSNGDAGKMEVDGKSILFKAGKPGCDGNSELGACHSTPHLDRAQGTGPPTFNYHGTEGM EDAQNLADLSSDFANTFMLDEELELEQKTLKNDECSPVRRIDDEEDEMVVHDQDVQRLVIVTQNSRVGEGSTKSGGKESKSISSELASAINDGLYFYEQE LKTKRSNRRKNASTYENRDGYLRLTNSASLISKSKAGENSAASCGHEESGSSNNTRKQNKVPKQQSYHKQRFFSSNSRNHGTGRNNFGIISESPPSNSVG FFFSSTPPENHGLRSSKLSVSPHSMLLGSSPPVGSMPKSFPPFQHPSHQLLEENGFKQQKYLKYRKRCLNDRKKMGIGCSEEMNTLYRFWSYFLRNIFVP SMYNEFQKFALEDASANYYYGMECLFRFYSYGLEKEFRDDLYKDFEELTLDFCRKGNIYGLEKYWAFHHYCRLGDKEPKKHPELERLLRDEYRTLEDFRA KEKSMKKDSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21160			LA RNA-binding protein (.1.2.3...		Potri.009G018100 [exp]	0	1
AT1G15780			unknown protein		Potri.003G028089 [exp]	3.60	0.8320
AT3G04820			Pseudouridine synthase family ...		Potri.005G051400 [exp]	4.89	0.8291
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.010G110700 [exp]	8.77	0.8132	GAI.1
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	14.35	0.8292
AT3G18770			Autophagy-related protein 13 (...		Potri.019G010700 [exp]	23.36	0.8037
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	25.59	0.8249	Pt-EMB177.4
AT1G45332			Translation elongation factor ...		Potri.003G109900 [exp]	26.83	0.7975
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	28.42	0.8120
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	28.56	0.8192
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Potri.005G206500 [exp]	34.20	0.7986	HVT1.2

Compare expression of checked genes

Potri.009G018100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.