Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74250 460 / 2e-155 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G11450 79 / 5e-15 DnaJ domain ;Myb-like DNA-binding domain (.1) AT2G33735 66 / 4e-13 Chaperone DnaJ-domain superfamily protein (.1) AT1G56300 64 / 9e-12 Chaperone DnaJ-domain superfamily protein (.1) AT1G71000 63 / 2e-11 Chaperone DnaJ-domain superfamily protein (.1) AT2G41000 63 / 3e-11 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G59980 64 / 2e-10 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT3G14200 61 / 3e-10 Chaperone DnaJ-domain superfamily protein (.1) AT1G24120 61 / 8e-10 ARL1 ARG1-like 1 (.1) AT5G06110 62 / 9e-10 DnaJ domain ;Myb-like DNA-binding domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G190000 [exp] 86 / 2e-17 AT3G11450 663 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.001G035800 [exp] 86 / 3e-17 AT3G11450 679 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.005G020300 [exp] 71 / 3e-14 AT1G56300 217 / 2e-73 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G010800 [exp] 66 / 1e-12 AT1G56300 200 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G123200 [exp] 68 / 5e-12 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 68 / 8e-12 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.003G070600 [exp] 65 / 2e-11 AT3G14200 147 / 1e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G164700 [exp] 64 / 3e-11 AT3G14200 186 / 4e-59 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G113400 [exp] 63 / 6e-11 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034688 [exp] 496 / 8e-170 AT1G74250 468 / 5e-158 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10017846 [exp] 470 / 2e-159 AT1G74250 464 / 1e-156 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022344 [exp] 189 / 4e-55 AT1G74250 204 / 5e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012524 [exp] 154 / 4e-41 AT1G74250 142 / 3e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10026919 [exp] 83 / 2e-16 AT5G06110 752 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020118 [exp] 82 / 4e-16 AT5G06110 749 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020117 [exp] 82 / 6e-16 AT5G06110 736 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026920 [exp] 75 / 7e-14 AT5G06110 681 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10029862 [exp] 69 / 2e-13 AT1G56300 201 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Lus10020685 [exp] 69 / 2e-13 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0361 [poplar] [flax] C2H2-zf PF12171 [poplar] [flax] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.009G018400.5 pacid=42771178 polypeptide=Potri.009G018350.1.p locus=Potri.009G018400 ID=Potri.009G018400.5.v4.1 annot-version=v4.1 ATGGCATCAAATCAGCTGCGATGCCATTACGAGGTGCTTGGTCTATCACGCGACTCGTCGCCTGAAGAAGTCCGTTCGGCTTTTAAAAAGCTTGCTCTCC GGCGCCATCCTGACAAGCTTCTCCAATCTGGCTTAAGCCAAGCCGAAGCTACTGCTCAATTTCAAGAGCTTGTTCAGGCTTACGAGGTCCTCTCCGACCC CAAAGAACGAGCTTGGTACGATTCTCACCGTTCTCAAATCCTCTTCTCCGATCCCAATTCTGGTAACTCGGTCCCTGACTCAGTCATTCCTAATTTGTTC TCTTTCTTCTCCAACACTGTTTACTCGGGTTATACTGATTCTGGAAGAGGTTTTTATAAGGTTTATTCTGATGTTTTTGATAAGATTTATGCGAATGAGG TTAATTTTTGTAGGAAATTAGGGTTAGGATTGGATAGTGTTAGGGAGGCTCCGTTGATGGGGAGTTTGCAGAGTGATTATGCGCAGGTTTCGGCTTTTTA TAATTATTGGTTGGGGTTTAGCACTGTTATGGATTTTTGTTGGGTTGATCAGTATGATGTGATGGCGGGGCCGAATAGGAAATCGAGGAGGGTTATGGAG GAGGAAAATAAGAAGTTGAGGAAGAAGGCGAGACGGGAGTATAATGAGACTGTGAGGGGGTTGGGGGAGTTTGTTAAGAAGAGGGATAAGAGGGTGATTG ATATGGTTGTTAAAAAGAATGCTGAGATGGAGAGGAAGAAGGAGGAGGAGAAGGAGAGGAAGAAGAAGTTGGAGAGGGAGAAGATGGAGAGGTTGAGAGC GTATGAGGAACCGGAGTGGGCGAGGGTGAATGAAGAGGAGGTGGATGGAATGGAGGGTTTTGAGGAAGAGGAGGATAAGGGGAAGAAGGGGAATGGAGGG AAGGAGTTGTATTGTGTCGTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAACAGTCAAAGAAGCATAAGGAGAAGGTTGCTGAGT TGAGGGACTCGTTTCAGGATGAAGATGACGAGAGGGAAGATATCGAGGAGGATGAGCTGGAGAAGAATGAGGACGTGGAGGAAATAGAGGAGAGGTTTAA AGAGGATTTTAAAATACAGCGGGAAGGGAATGGGGCTGAGGTTCTGTATTCAAGTGATAAAGAAGATGGGTTTTTTGATGCTGATGACATGGATGGGATT GACGAGAAGAATGGGAATGTAGAGGATGAGGAGGGGGAGGAAATGAGCGTACTTGAAGCAATGGTGTCGGGGCACAGAAGTAGGAAAAGTAGGGGTTCAG GGCATACGAATGAGGAGTTTCCACAGGAAGTTGAGGATGTGAAAGAGGAGGTTGAGGTTATGGAATATAATAACCGGAAGACTAGGAGAAGAGGCAAGAA AATGAGGGGTTGGAACAATGGTGGTGAAGGTGTTACAAGCGACATTGATGAAAGCAAGAGTGCCAATGAAGAAACTAATGGGTGTGATGATGAGCAAAAC AAGGAGCCTGCTTCTAATTCTTTTGTGGAGGATGAGAATGATGGTAAAATTGATGATCATTTAGGGAAAACTGGCAAGAGCTCAAACCAATCTACCAAGA AGAAAGGGGCTGCAAAGAAGGAAGCAAATGTGAAATCAAAGAACTTGTCTAAAGGCAAGAAAGGAAAGGCAATTTCTAAGGATTCTGGTAATGTGTGTGA TACATGTGGAGTGGAATTTGAATCAAGGAATAAATTGCATAAGCATTTGAGTGATACTGGTCATGGTACACTGAAATCCCACTGA
AA sequence Show only first row Show all	>Potri.009G018400.5 pacid=42771178 polypeptide=Potri.009G018350.1.p locus=Potri.009G018400 ID=Potri.009G018400.5.v4.1 annot-version=v4.1 MASNQLRCHYEVLGLSRDSSPEEVRSAFKKLALRRHPDKLLQSGLSQAEATAQFQELVQAYEVLSDPKERAWYDSHRSQILFSDPNSGNSVPDSVIPNLF SFFSNTVYSGYTDSGRGFYKVYSDVFDKIYANEVNFCRKLGLGLDSVREAPLMGSLQSDYAQVSAFYNYWLGFSTVMDFCWVDQYDVMAGPNRKSRRVME EENKKLRKKARREYNETVRGLGEFVKKRDKRVIDMVVKKNAEMERKKEEEKERKKKLEREKMERLRAYEEPEWARVNEEEVDGMEGFEEEEDKGKKGNGG KELYCVVCGKKFKSEKQWKNHEQSKKHKEKVAELRDSFQDEDDEREDIEEDELEKNEDVEEIEERFKEDFKIQREGNGAEVLYSSDKEDGFFDADDMDGI DEKNGNVEDEEGEEMSVLEAMVSGHRSRKSRGSGHTNEEFPQEVEDVKEEVEVMEYNNRKTRRRGKKMRGWNNGGEGVTSDIDESKSANEETNGCDDEQN KEPASNSFVEDENDGKIDDHLGKTGKSSNQSTKKKGAAKKEANVKSKNLSKGKKGKAISKDSGNVCDTCGVEFESRNKLHKHLSDTGHGTLKSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74250			DNAJ heat shock N-terminal dom...		Potri.009G018400 [exp]	0	1
AT3G24080			KRR1 family protein (.1.2)		Potri.001G125200 [exp]	1.41	0.9397
AT5G08450			unknown protein		Potri.018G145542 [exp]	8.77	0.9133
AT5G41020	MYB		myb family transcription facto...		Potri.015G095000 [exp]	8.83	0.9246
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	9.48	0.9136
AT1G75335			unknown protein		Potri.013G126701 [exp]	10.48	0.8918
AT1G76810			eukaryotic translation initiat...		Potri.012G039200 [exp]	13.60	0.9140
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Potri.006G004900 [exp]	13.60	0.8466
AT5G48610			unknown protein		Potri.017G058701 [exp]	14.56	0.9153
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.005G075000 [exp]	15.29	0.8765
AT5G43490			unknown protein		Potri.017G058500 [exp]	15.49	0.9122

Compare expression of checked genes

Potri.009G018400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.