Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56850 160 / 1e-47 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 152 / 6e-45 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G49720 107 / 2e-26 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G19290 97 / 4e-23 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT4G34000 98 / 5e-23 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 89 / 6e-20 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT3G44460 82 / 5e-18 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 73 / 8e-15 bZIP GBF4 G-box binding factor 4 (.1) AT5G44080 64 / 8e-12 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 65 / 1e-11 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G220700 [exp] 377 / 4e-133 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 218 / 6e-70 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 196 / 2e-61 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 159 / 5e-47 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 147 / 1e-42 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 141 / 2e-40 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.002G125400 [exp] 106 / 4e-26 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G101200 [exp] 102 / 6e-25 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.014G028200 [exp] 100 / 3e-24 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008929 [exp] 154 / 3e-45 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10008928 [exp] 147 / 5e-44 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 150 / 1e-43 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10017049 [exp] 121 / 9e-32 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 119 / 4e-31 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10006489 [exp] 101 / 2e-24 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10014066 [exp] 99 / 2e-23 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10009755 [exp] 96 / 3e-22 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10028888 [exp] 91 / 7e-21 AT3G56850 157 / 1e-45 ABA-responsive element binding protein 3 (.1) Lus10021369 [exp] 91 / 1e-20 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.009G018500.5 pacid=42770798 polypeptide=Potri.009G018500.5.p locus=Potri.009G018500 ID=Potri.009G018500.5.v4.1 annot-version=v4.1 ATGGGTGTTCAAACAATGGCATCTCAAAGAAATGGCCAGCAGTCTCATCTACAGCCGTATCGGTTGACGAGGCAAAACTCGTGGTATAACCTCACTCTCA ATGAAGTTGAAAACCAATTAGGAAATTTAGGGAAGCCCTTGTGTAGCATGAACCTTGACGAGCTTCTTAAAAATGTATGGAGCACTGAAGCTCATCAATC CGTGGGAATGGATAGTGAAAGTACCTCAATGTCTTCTCTCCAACATCAGGCTAGTCTCACATTGGCCAGGGCATTGAGTGGGAAGACAGTGGATCAAGTC TGGAAAGAGATTCAACAAGGGCAGGAGAAGAGGTTTGGTGAGGAGATGAAAGTTCAGGAAAGAGAGCAGACTCTTGGTGAAATGACTTTGGAGGATTTCT TGGTACAAGCAGGACTTTTTGCCAAAGCAACTATAAGCCCTTCTTTGGATTTAGTTACTGTTGATGCAGTGACCCCACAAAGTTTTTCACAGAAAATGGT CCTTTCCTCATCCCCGTCAACAAGCACATTATCTGATACTACGACATCAGGACGGAAAAGGGATACCCCAGATGCATTTGAGAAGAGTATTGAGAGGAAG CTCAAGAGAAAAATCAAGAACAGGGAATCTGCTGCCCGTTCACGAGCTAGAAAACAGGCCTATCATAACGAGCTGGTGAGCAAGATTTCACATTTAGGGG AGGAGAATATAAAGCTCAAGAAAGAGAAGGTAGGAAGGATATTTCATTTTTATCAGTTTGCCTTTTCTTTTTCTATTAACACATGTCAACCACTGCTAGA GGGAAGATGA
AA sequence Show only first row Show all	>Potri.009G018500.5 pacid=42770798 polypeptide=Potri.009G018500.5.p locus=Potri.009G018500 ID=Potri.009G018500.5.v4.1 annot-version=v4.1 MGVQTMASQRNGQQSHLQPYRLTRQNSWYNLTLNEVENQLGNLGKPLCSMNLDELLKNVWSTEAHQSVGMDSESTSMSSLQHQASLTLARALSGKTVDQV WKEIQQGQEKRFGEEMKVQEREQTLGEMTLEDFLVQAGLFAKATISPSLDLVTVDAVTPQSFSQKMVLSSSPSTSTLSDTTTSGRKRDTPDAFEKSIERK LKRKIKNRESAARSRARKQAYHNELVSKISHLGEENIKLKKEKVGRIFHFYQFAFSFSINTCQPLLEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.009G018500 [exp]	0	1
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.006G066700 [exp]	5.29	0.8107
AT1G67540			unknown protein		Potri.010G057800 [exp]	10.81	0.8158
AT4G21520			Transducin/WD40 repeat-like su...		Potri.004G034600 [exp]	12.24	0.7772
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G023200 [exp]	21.44	0.7837
AT5G06750			Protein phosphatase 2C family ...		Potri.016G045600 [exp]	21.67	0.6754
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.003G095300 [exp]	28.61	0.7693	SYP23.1
AT2G01460			P-loop containing nucleoside t...		Potri.010G111900 [exp]	28.98	0.7361
					Potri.001G135100 [exp]	30.98	0.7463
AT4G22120			ERD (early-responsive to dehyd...		Potri.011G009801 [exp]	31.85	0.7188
AT2G25740			ATP-dependent protease La (LON...		Potri.006G236400 [exp]	32.29	0.7738

Compare expression of checked genes

Potri.009G018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.