Plant FIBer expression Database

Potri.009G018600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G18110 158 / 3e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
AT5G19510 154 / 8e-47 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
AT1G30230 154 / 8e-47 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1.2)
AT5G12110 150 / 3e-45 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G224700
[exp]
278 / 2e-95 AT2G18110 153 / 3e-46 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Potri.012G096400
[exp]
161 / 2e-49 AT2G18110 275 / 4e-94 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Potri.015G094200
[exp]
159 / 9e-49 AT2G18110 299 / 1e-103 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037618
[exp]
158 / 3e-48 AT2G18110 319 / 2e-111 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Lus10013555
[exp]
157 / 6e-48 AT2G18110 313 / 3e-109 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Lus10017261
[exp]
155 / 1e-45 AT2G18110 308 / 3e-105 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Lus10026784
[exp]
152 / 1e-45 AT5G12110 297 / 6e-103 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
Lus10036101
[exp]
151 / 1e-45 AT5G12110 296 / 1e-102 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00736 EF1_GNE EF-1 guanine nucleotide exchange domain
Representative CDS sequence
>Potri.009G018600.1 pacid=42770753 polypeptide=Potri.009G018600.1.p locus=Potri.009G018600 ID=Potri.009G018600.1.v4.1 annot-version=v4.1
ATGGCAGTTACTTTTTCAGATCTCCACACAGAATCCGGCCTCAAATCCCTCAACGAGTTTCTCGTCGGCAAATCTTATATTTCCGGTGATCAGATTTCCA
AAGATGACATCAAAGTTTACGGTGCTGTTTTGGAGAAACCTGGTCGTGATTTCCCTAATGCTAGCAAGTGGTACGAATCTGTTTCTTCACAGCTCGCTTT
AAGCTTCCCAGGTAAAGCTGTTGGTGTAAGCATTTGTGGCAAAACAGCTGCTGCTGCTCCCGTTGAAGCTGCCCCAGCCAAGGAGGCTGCTGGTGATGAC
GATGACGACTTGGATCTCTTTGGTGATGAGACTGAAGAGGACAAGAAGGCAGCGGAGGAGAGGGAGAAAGCTAAAAAGGCATCCTCAAAGAAGAAAGAGA
GTGGGAAATCTTCAGTTCTCATGGATGTGAAGCCATGGGATGATGAGACAGACATGGTGGAGTTGGAGAAGGCAGTCAGGAGTGTTGAGATGCCTGGTCT
CTTTTGGGGAGCATCAAAATTGGTTCCAGTCGGTTATGGAATCAAGAAGCTACAAATCATGCTTACCATTGTAGACGACCTTGTGTCAGTGGATTCCCTC
ATTGAGGAGCGTCTCACAGTCGAGCCTTGCAATGAATATATCCAGAGCTGTGACATTGTTGCGTTCAACAAAATATAA
AA sequence
>Potri.009G018600.1 pacid=42770753 polypeptide=Potri.009G018600.1.p locus=Potri.009G018600 ID=Potri.009G018600.1.v4.1 annot-version=v4.1
MAVTFSDLHTESGLKSLNEFLVGKSYISGDQISKDDIKVYGAVLEKPGRDFPNASKWYESVSSQLALSFPGKAVGVSICGKTAAAAPVEAAPAKEAAGDD
DDDLDLFGDETEEDKKAAEEREKAKKASSKKKESGKSSVLMDVKPWDDETDMVELEKAVRSVEMPGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSL
IEERLTVEPCNEYIQSCDIVAFNKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G18110 Translation elongation factor... Potri.009G018600
[exp]
0 1
AT2G34520 RPS14 mitochondrial ribosomal protei... Potri.001G424950
[exp]
2.82 0.8093
AT5G02960 Ribosomal protein S12/S23 fami... Potri.010G217100
[exp]
3.00 0.8156 RPS23.2
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Potri.001G197900
[exp]
4.24 0.7899
AT4G39730 Lipase/lipooxygenase, PLAT/LH2... Potri.007G091100
[exp]
6.92 0.7831
AT1G13380 Protein of unknown function (D... Potri.010G124800
[exp]
7.74 0.7941
AT5G60390 GTP binding Elongation factor ... Potri.006G130900
[exp]
7.74 0.7645
AT3G16640 TCTP translationally controlled tum... Potri.008G221200
[exp]
7.93 0.7830
AT5G65260 RNA-binding (RRM/RBD/RNP motif... Potri.001G311600
[exp]
8.06 0.7609
AT1G65380 AtRLP10, CLV2 clavata 2, Receptor Like Prote... Potri.013G087200
[exp]
8.66 0.7295 CLV2.1
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Potri.001G311000
[exp]
12.00 0.7930

Potri.009G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.