Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21090 355 / 5e-126 Leucine-rich repeat (LRR) family protein (.1) AT3G43740 345 / 5e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G71830 227 / 5e-71 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 223 / 2e-69 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G34210 219 / 5e-68 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT2G13790 211 / 6e-65 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 198 / 3e-60 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT5G16000 130 / 4e-35 NIK1 NSP-interacting kinase 1 (.1) AT3G25560 130 / 5e-35 NIK2 NSP-interacting kinase 2 (.1.2.3) AT4G30520 129 / 2e-34 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219500 [exp] 382 / 7e-137 AT5G21090 348 / 2e-123 Leucine-rich repeat (LRR) family protein (.1) Potri.003G166200 [exp] 274 / 5e-94 AT5G21090 275 / 2e-94 Leucine-rich repeat (LRR) family protein (.1) Potri.001G061600 [exp] 271 / 4e-93 AT5G21090 272 / 2e-93 Leucine-rich repeat (LRR) family protein (.1) Potri.001G296500 [exp] 271 / 6e-93 AT3G43740 278 / 1e-95 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.009G090700 [exp] 262 / 2e-89 AT3G43740 270 / 2e-92 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.003G023000 [exp] 226 / 8e-71 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.013G117200 [exp] 223 / 3e-69 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 222 / 5e-69 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 221 / 9e-69 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002117 [exp] 271 / 8e-93 AT3G43740 273 / 9e-94 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10002579 [exp] 270 / 2e-92 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10026751 [exp] 256 / 1e-87 AT5G21090 250 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) Lus10013902 [exp] 277 / 3e-87 AT1G49870 454 / 2e-145 unknown protein Lus10001807 [exp] 219 / 2e-72 AT5G21090 227 / 9e-76 Leucine-rich repeat (LRR) family protein (.1) Lus10020962 [exp] 226 / 2e-70 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10004958 [exp] 206 / 2e-67 AT1G34210 215 / 2e-66 somatic embryogenesis receptor-like kinase 2 (.1) Lus10042755 [exp] 200 / 6e-65 AT5G21090 199 / 8e-65 Leucine-rich repeat (LRR) family protein (.1) Lus10028716 [exp] 192 / 1e-57 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006057 [exp] 144 / 6e-40 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.009G018800.2 pacid=42772534 polypeptide=Potri.009G018800.2.p locus=Potri.009G018800 ID=Potri.009G018800.2.v4.1 annot-version=v4.1 ATGGCTGCACAGGCATGGCTATGGACAAGTCTAACTGTTGCGTTGACTTTTATTTTGACAGTGGTCAATGGTAACTCAGAAGGAGATGCCTTGTTCACAC TAAGAAAGAGCTTATCGGATCCGGATAATGTCCTCCAGAGCTGGGATCCGACTCTTGTTAACCCGTGTACTTGGTTTCACATCACTTGCAACCAGGATAA TCGCGTCACTCGCCTGGACTTGGGAAACTCAAATCTATCTGGACATCTAGTACCTGAACTTGGAAAGCTAGAGCATTTGCAATACCTGGAACTTTATAAA AACAACATTCAAGGAACTATCCCCAGTGAGCTAGGTAGCTTGAAGAGCCTTATTAGCTTGGACTTGTATAACAACAACATTTCAGGAACCATTCCTCCTT CCCTGGGGAGGTTGAAGTCTCTTGTCTTTCTACGACTTAATGACAACCGATTAACTGGATCAATCCCCAGGGAACTTTCCAATGTTTCAAGCCTCAAAGT TGTGGATGTCTCAAACAATGATTTATGTGGAACAATTCCTACCAGTGGACCTTTTGAACACATCCCTTTGAACAACTTTGAGAATAATCCTCGACTGGAA GGTCCCGAGTTGCTTGGACTTGCGAGTTATGACACAAACTGCTCATGA
AA sequence Show only first row Show all	>Potri.009G018800.2 pacid=42772534 polypeptide=Potri.009G018800.2.p locus=Potri.009G018800 ID=Potri.009G018800.2.v4.1 annot-version=v4.1 MAAQAWLWTSLTVALTFILTVVNGNSEGDALFTLRKSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGHLVPELGKLEHLQYLELYK NNIQGTIPSELGSLKSLISLDLYNNNISGTIPPSLGRLKSLVFLRLNDNRLTGSIPRELSNVSSLKVVDVSNNDLCGTIPTSGPFEHIPLNNFENNPRLE GPELLGLASYDTNCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.009G018800 [exp]	0	1
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Potri.013G088800 [exp]	11.48	0.6989
AT4G38790			ER lumen protein retaining rec...		Potri.004G167400 [exp]	18.43	0.6889
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.019G051500 [exp]	22.44	0.6454
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Potri.008G113200 [exp]	30.16	0.6650
AT1G61240			Protein of unknown function (D...		Potri.004G036800 [exp]	40.21	0.6868
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.001G336500 [exp]	41.41	0.6557
					Potri.016G124300 [exp]	42.47	0.6601
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.008G214100 [exp]	44.15	0.6773
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022800 [exp]	49.14	0.6720
AT3G07550			RNI-like superfamily protein (...		Potri.017G056400 [exp]	54.69	0.6656

Compare expression of checked genes

Potri.009G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.