Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44350 258 / 9e-87 NAC ANAC061 NAC domain containing protein 61 (.1.2) AT5G22380 256 / 3e-86 NAC ANAC090 NAC domain containing protein 90 (.1) AT2G17040 139 / 4e-40 NAC ANAC036 NAC domain containing protein 36 (.1) AT4G27410 137 / 7e-39 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT3G15500 136 / 2e-38 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT2G02450 137 / 3e-38 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT4G17980 133 / 7e-38 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G08790 134 / 8e-38 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G52890 134 / 9e-38 NAC ANAC019 NAC domain containing protein 19 (.1) AT1G33060 139 / 1e-37 NAC ANAC014 NAC 014 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218800 [exp] 401 / 3e-143 AT5G22380 272 / 3e-92 NAC domain containing protein 90 (.1) Potri.016G076100 [exp] 233 / 7e-77 AT5G22380 214 / 2e-69 NAC domain containing protein 90 (.1) Potri.016G076000 [exp] 232 / 1e-76 AT5G22380 226 / 4e-74 NAC domain containing protein 90 (.1) Potri.006G209200 [exp] 228 / 9e-75 AT5G22380 241 / 3e-80 NAC domain containing protein 90 (.1) Potri.003G046700 [exp] 140 / 2e-39 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.009G141600 [exp] 137 / 4e-39 AT2G17040 314 / 6e-108 NAC domain containing protein 36 (.1) Potri.008G081500 [exp] 137 / 2e-38 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.001G404100 [exp] 136 / 3e-38 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.011G123300 [exp] 135 / 5e-38 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020643 [exp] 288 / 1e-98 AT5G22380 283 / 1e-96 NAC domain containing protein 90 (.1) Lus10004846 [exp] 284 / 6e-97 AT5G22380 275 / 1e-93 NAC domain containing protein 90 (.1) Lus10029410 [exp] 176 / 3e-54 AT5G22380 171 / 1e-52 NAC domain containing protein 90 (.1) Lus10022636 [exp] 139 / 1e-39 AT2G17040 287 / 6e-97 NAC domain containing protein 36 (.1) Lus10008419 [exp] 140 / 1e-38 AT2G02450 327 / 7e-109 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10003333 [exp] 136 / 2e-38 AT2G17040 293 / 2e-99 NAC domain containing protein 36 (.1) Lus10030446 [exp] 135 / 2e-38 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10003367 [exp] 140 / 3e-38 AT2G02450 333 / 3e-110 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008420 [exp] 137 / 6e-38 AT2G02450 320 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10042731 [exp] 134 / 6e-38 AT1G01720 414 / 7e-147 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.009G019200.2 pacid=42772317 polypeptide=Potri.009G019200.2.p locus=Potri.009G019200 ID=Potri.009G019200.2.v4.1 annot-version=v4.1 ATGGAAGAACTCCCTCTAGGTTACCGCTTCTACCCAACGGAAGAAGAGCTAGTCTCCTTCTACTTGCATAATAAGCTGGAAGGGACGAGACAAGAACTGC AACGTGTGATTCCAGAGATCAGCATATACGACATCGAGCCGGGGGATCTTCCACAGCTTTCAGGAGAATTATGTCGAGGCAACACGGAGCAGTGGTTCTT CTTTACACCCAGGCAAGCGAGAGAAGCTAGGGGAGGGCGACCTAATCGGACTACAGCAACCGGGTACTGGAAGGCCACAGGCTCTCCTGGTTATGTTTAC TCATCGGATAATCGAGTGATTGGATTGAAGAAAACCATGGTGTTCTATATAGGAAAAGCTCCGACTGGAAGAAAAACCAAATGGAAGATGAATGAGTATA GAGCCATTGAAGTTCATGAATCGTCTAGAAATGCTACTTCAAAGTTGAGGCATGAATTCAGTTTGTGCCGTGTCTATGTGGTATCAGGAAGCTTTCGGGC ATTTGATAGACGGCCTCTAGAAGCTGTAACAAGAGGGACACAACATCTTCTTAGGGGGACACATGTTGGTGATGCAGCAACTACACCTGCTCAGGACCCT ATAACTGTGGAGATGACAAGCTCACCTGAAACTTCATACTCGGGAGGAGACCATGTTGATTACCCAGGGACTGCAGCAAGTGCCAACTGGGGGCTGATCC TGCATGGGAATGACCGGAACAACTGGATTGGCCCAGCACAGATAGATTTGTAA
AA sequence Show only first row Show all	>Potri.009G019200.2 pacid=42772317 polypeptide=Potri.009G019200.2.p locus=Potri.009G019200 ID=Potri.009G019200.2.v4.1 annot-version=v4.1 MEELPLGYRFYPTEEELVSFYLHNKLEGTRQELQRVIPEISIYDIEPGDLPQLSGELCRGNTEQWFFFTPRQAREARGGRPNRTTATGYWKATGSPGYVY SSDNRVIGLKKTMVFYIGKAPTGRKTKWKMNEYRAIEVHESSRNATSKLRHEFSLCRVYVVSGSFRAFDRRPLEAVTRGTQHLLRGTHVGDAATTPAQDP ITVEMTSSPETSYSGGDHVDYPGTAASANWGLILHGNDRNNWIGPAQIDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Potri.009G019200 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	4.24	0.9484
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040600 [exp]	4.89	0.9361
					Potri.015G140800 [exp]	9.53	0.9193
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	12.00	0.9330
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G012535 [exp]	13.41	0.9241
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G014625 [exp]	13.85	0.9205
AT3G16510			Calcium-dependent lipid-bindin...		Potri.001G070400 [exp]	14.83	0.9122
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144600 [exp]	15.09	0.9290
AT4G15350		CYP705A2	"cytochrome P450, family 705, ...		Potri.009G066200 [exp]	16.52	0.9246
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.011G062600 [exp]	18.00	0.9255

Compare expression of checked genes

Potri.009G019200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.