Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27260 96 / 1e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218300 [exp] 184 / 8e-58 AT2G27260 94 / 6e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204000 [exp] 65 / 4e-12 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G071200 [exp] 59 / 3e-10 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G218201 [exp] 47 / 3e-06 ND / Potri.005G166600 [exp] 42 / 0.0002 AT2G27080 114 / 2e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.009G019900 [exp] 40 / 0.0006 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005216 [exp] 119 / 2e-32 AT2G27260 152 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043411 [exp] 102 / 5e-26 AT2G27260 148 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034173 [exp] 101 / 1e-25 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013329 [exp] 95 / 1e-24 AT2G27260 89 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021284 [exp] 64 / 1e-11 AT3G52460 164 / 1e-48 hydroxyproline-rich glycoprotein family protein (.1) Lus10041350 [exp] 52 / 1e-08 AT5G22870 94 / 3e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 53 / 3e-08 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 52 / 9e-08 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10010103 [exp] 47 / 3e-06 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018376 [exp] 44 / 3e-05 AT4G05220 152 / 3e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.009G019800.1 pacid=42770744 polypeptide=Potri.009G019800.1.p locus=Potri.009G019800 ID=Potri.009G019800.1.v4.1 annot-version=v4.1 ATGGCATCATCTGATCCTTCTAGACCCGCGACCGGCTACCCTTTTGTCCCAAACGGCATCCACTACCCACCACCGCCACCCGGCACCGCCTATCCTTACC AAGCCCCACCACCACAACCCGCTAACCCTTACTACTACAACACCAACCAACCCTACCCTAACCAACGCGCCACCCTCCTCCGCCGCTTAATCGCTGCTCT AATCATCGTCACAGTCATTTTCTTCACTATTCTCTTCATTGTCTGGCTTGTTATCCGACCCCACCTCCCCGAATTCCGCGTCACTTCCCTCTCTGTCTCC AGCTTCAATGCATCCTCTTCTTCCTCCAGTGTGTCTGGTAACTGGAACGCCAGGTTTCAGGTTTATAATCCGAACAAGTTGAAAATCTCGTACGGTGATA TACAGAGTTCGATTTACTATAAGTCTGAGTTCTTGTCCCAGACGAGGATTCCTCCGTTCAAACAGGCCAAAAAGAATGTTACTGATATCAATGCGGAATA TGGGGCGATGGGTTCTTATATTGCGGGGCGGGCGGTGAATCAGATTAATGGGGATAAAGGGCGTGGATCGGTGAGTTTTAATTTGAAGATTGTTGCTGAT GCGGTGTATAGGGTTGGTGGGTTTAGGGCAAGAAGAAGGTTGCTTAGGGTTTTTTGTGATGATTTGGCGGTTGGGATTTCCGGGAATGGTGGATCTGGGA ACTTGACTGGTGGTGCTAGGCGATGTAAAGTTTATTCCTGA
AA sequence Show only first row Show all	>Potri.009G019800.1 pacid=42770744 polypeptide=Potri.009G019800.1.p locus=Potri.009G019800 ID=Potri.009G019800.1.v4.1 annot-version=v4.1 MASSDPSRPATGYPFVPNGIHYPPPPPGTAYPYQAPPPQPANPYYYNTNQPYPNQRATLLRRLIAALIIVTVIFFTILFIVWLVIRPHLPEFRVTSLSVS SFNASSSSSSVSGNWNARFQVYNPNKLKISYGDIQSSIYYKSEFLSQTRIPPFKQAKKNVTDINAEYGAMGSYIAGRAVNQINGDKGRGSVSFNLKIVAD AVYRVGGFRARRRLLRVFCDDLAVGISGNGGSGNLTGGARRCKVYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27260			Late embryogenesis abundant (L...		Potri.009G019800 [exp]	0	1
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	1.73	0.7944
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	2.00	0.7903
AT5G54830			DOMON domain-containing protei...		Potri.006G262300 [exp]	3.00	0.7834
AT4G38040			Exostosin family protein (.1)		Potri.008G060500 [exp]	8.48	0.7175
AT1G25370			Protein of unknown function (D...		Potri.010G122700 [exp]	10.95	0.6886
AT5G13890			Family of unknown function (DU...		Potri.002G237200 [exp]	14.49	0.6993
					Potri.014G175100 [exp]	18.16	0.7334
AT4G27470		ATRMA3	RING membrane-anchor 3 (.1)		Potri.001G401600 [exp]	19.97	0.7576
AT1G54215			proline-rich family protein (....		Potri.003G064900 [exp]	24.14	0.7247
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Potri.017G096900 [exp]	26.53	0.7740

Compare expression of checked genes

Potri.009G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.