Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53730 39 / 0.001 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218201 [exp] 304 / 2e-105 ND / Potri.009G019800 [exp] 45 / 1e-05 AT2G27260 96 / 1e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000324 [exp] 144 / 3e-42 AT2G35980 47 / 5e-06 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013331 [exp] 100 / 1e-25 ND / Lus10005216 [exp] 44 / 6e-05 AT2G27260 152 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G019900.2 pacid=42771678 polypeptide=Potri.009G019900.2.p locus=Potri.009G019900 ID=Potri.009G019900.2.v4.1 annot-version=v4.1 ATGTCTCAACTAAGCTATCTCCCCACCACCACCACCACCACCAAATCTGACGCAGCAAAAGCCAAAGCACATGACTGCTTCGTGTTCCTTCTCTTCATCA CAGTAGCAACCATACTAATTGTTTCTGTTCCTGTGATAACTCTTTGCATAATCTCTCTTCAACCTCAAATCCCTCAGTTCAATGTCAGTTCATCCTCGCT AACAGTCCTTAATGTCTCCTCTAACACCGTAACCGCAAACCTTAACGTTACCTTCTCCATGAAAAACCCAAATAGCAAAACCATGTCCTATGACAAAATC ACTGCGTTGGTGCTCGATGGGAAGGAAAGTCTCTCTAGCATTACTCTTCCACCCTTTCACCAACCTGGGAAAACCCAAAAAACATTACTAACTGTGTTTC CTAGCTTCTTTTTCCAGGTTAATGACAATTATTCTAGTGGTGGTAGAGTGAATTTGACAGTGAAGTTGCATGCTATGGCAAAGTATGGAAGGTGGACGTG GCCTGCAAACATGGATTTGATGAAGGCAACGTGTGATGAGAATGTGAAGGTAGAGTTTCCTTCAAAGGTGACAACGTTGGTGTTTGGTTCTAGTGAATGT GATGTCAATGGGCAGTGGAAAAGAATTGTGACTAAATGCAGCAGATTATTTTGGAATTACATTTATGTTGTTGCCATTGTTTTGTTCATTTTGTTTGTTT CACTTTAG
AA sequence Show only first row Show all	>Potri.009G019900.2 pacid=42771678 polypeptide=Potri.009G019900.2.p locus=Potri.009G019900 ID=Potri.009G019900.2.v4.1 annot-version=v4.1 MSQLSYLPTTTTTTKSDAAKAKAHDCFVFLLFITVATILIVSVPVITLCIISLQPQIPQFNVSSSSLTVLNVSSNTVTANLNVTFSMKNPNSKTMSYDKI TALVLDGKESLSSITLPPFHQPGKTQKTLLTVFPSFFFQVNDNYSSGGRVNLTVKLHAMAKYGRWTWPANMDLMKATCDENVKVEFPSKVTTLVFGSSEC DVNGQWKRIVTKCSRLFWNYIYVVAIVLFILFVSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.009G019900 [exp]	0	1
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.001G022100 [exp]	21.42	0.5851
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.005G169000 [exp]	25.09	0.5886
AT4G02250			Plant invertase/pectin methyle...		Potri.004G016500 [exp]	26.26	0.6081
					Potri.011G082050 [exp]	53.04	0.5565
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.003G104600 [exp]	54.33	0.5991
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.001G397900 [exp]	94.86	0.5590
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	115.41	0.5409
AT1G15190			Fasciclin-like arabinogalactan...		Potri.019G002300 [exp]	196.96	0.5390

Compare expression of checked genes

Potri.009G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.