Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44200 869 / 0 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 437 / 7e-145 ATNEK5 NIMA-related kinase 5 (.1) AT3G04810 436 / 2e-141 ATNEK2 NIMA-related kinase 2 (.1.2) AT1G54510 435 / 4e-141 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT5G28290 432 / 1e-140 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 421 / 8e-137 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G12200 312 / 4e-95 ATNEK7 NIMA-related kinase 7 (.1.2) AT5G18700 149 / 4e-36 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT1G53570 144 / 1e-35 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT3G61960 140 / 2e-34 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218100 [exp] 1520 / 0 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.006G056300 [exp] 446 / 1e-144 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 445 / 1e-144 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.005G051600 [exp] 439 / 3e-142 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 437 / 6e-142 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.002G049400 [exp] 434 / 4e-141 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.001G018700 [exp] 432 / 1e-140 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 426 / 2e-138 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 141 / 6e-34 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001857 [exp] 935 / 0 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 924 / 0 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001783 [exp] 438 / 1e-142 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 436 / 5e-142 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 436 / 1e-141 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10040499 [exp] 436 / 2e-141 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 428 / 1e-134 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10015928 [exp] 404 / 2e-129 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 404 / 3e-129 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10031834 [exp] 383 / 2e-123 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G020100.1 pacid=42770818 polypeptide=Potri.009G020100.1.p locus=Potri.009G020100 ID=Potri.009G020100.1.v4.1 annot-version=v4.1 ATGGAGTCACGAATGGATCAGTATGAAATCATGGAGCAGATCGGTCGTGGTGCTTTTGGTGCTGCTATTCTTGTTCATCATAAATCGGAGAGGAAGAAGT ATGTGTTGAAGAAGATCAGGCTTGCGAGACAAACTGAGAGATGCCGGAGATCTGCTCATCAAGAAATGGCGCTGATTGCGCGAATTCAGCATCCGTACAT TGTGGAATTTAAAGAAGCATGGGTTGAGAAGGGTTGCTATGTTTGTATTGTTACCGGATATTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCA AATGGGGTGTATTTTCCTGAAGAGAAACTCTGCAAGTGGTTCACTCAACTACTGTTAGCGGTGGAATATCTGCATGGCAATTTTGTTCTACATCGGGACC TGAAATGTTCCAACATCTTTCTTACCAAAGAACAGGATGTTCGCCTTGGGGATTTTGGACTTGCTAAGACTCTGAAAGCAGATGACTTGGCTTCCTCAGT GGTTGGAACTCCTAATTACATGTGCCCTGAACTACTTGCAGATATTCCTTATGGTTTCAAATCAGATATTTGGTCCTTGGGGTGCTGTATGTATGAGATG GCTGCTCGTCGTCCTGCCTTTAAAGCTTTTGACATGGCAGGATTGATTAGCAAGATAAATCGTTCTTCTATTGGCCCGTTGCCTTCCTGCTATTCTCCGT CTTTGAAAACACTCATTAAAGGCATGCTGAGAAAGAATCCTGAGCATCGTCCAAATGCATCCGAGATTTTGAAGCACCCATACTTGCAGACATATGTCGA TCAGTACCGTCCATCCTTCAGTCCTCCCACATCCTGCTCTCCTGAGAAACCTATTCCTAGAAGTCGTGAATCTCGAAGAAGTATGGATGAAAGCCAGACC AGTAATAGTTCTAGTAGTGATAAGGATAGTTTGCCTTCAAGTGATCGGAATATCCCAGCAGTGGTCTCAAATTGTGACACTAAAGCCACTGATACAGATT TAGCTTCTGTTGGTGATGAAGATGGGACCAAGGAGCCCATGCCAAGCGAAGAAGAAAGAGGTCCCAATGTTTGCATTGTCAAAATGAATGAGCAGAGGGT GATGAAACCTTCTCATAATGAACATGGATGCAATGTCGAACCAAAGCAACCAAAAACTATCAAAGGTATTATGATGGCCTTAAAAGAAGGAAAACCTAGA GAAAATAGTTCCTCGTCGAGAGGAAATCATACAAAGTCTGGAAGTGCACCAACACAAAGAAGTAACATAGAAGCATCACCAAAACCTCTTATACCTAATG CCCTTGCATCTGGTTTAAAGTCTAATGCAGATACACCAACTGTTGCCCCAGCAAAAGCAGCCTTGGATTCTGCAAAGCAGGTCCAGGGATCACATCCTTT GAAACACCAGTTACCTATAATTGAGTCCTCACCGAAGACTAAACTCAGACATGATGGGACTCCTCCACCTGGTCCAATTAAACATGTTGATGATGGACTT GCCATGAAGCCAAGGCAAAGAACACCTAATCTATTTAGGCGATCTTCATTTCCTGGAAGGACAAGACAAACAGGAGCTGATGTTCCAAATGGAAACATGA AGTTGAGTCCAACTGAGAAAAACCAAGAACCTGAAAATACTTATCAAGTTCCTGATGGTCGCCCTTATTTTTCCAAGGAGGTATCGCAAGAGTCTCAAAA AGCTCTATTCAGAGCCTGCAAAGGAAAGCAGGCAGAAAGCAGTAATTCTGTCTCATCTTCAATGTCAATTCAATCTTTTGAGCTTTGTGATGATGCAACA ACTCCATTTGTTGCCATGCCTGAACAGACACTTCCTAATCATGAGGCAGTCATCTGCACGGAAAGCTTAGAAAATCATCCACCTGGTTGTTCTCCTGCTA CCACTTTGCATTCTGGCATGTCTGAAAATTTGTCTTGGGAAAACAGTGCATGTGCTGGATGTGCTCATAAATCCATACTATGCTCAGAGGAAACCTCGGA TGTTGTCACAGATCTTCACAAGAAAACTGTTGGTGATGGGAGAGAGGGTGTAAGCAGTGCTCTGAATCTGATAGTCTCAAGTTTTGAAGAGAGATTTATT TGTAAAGATACTAATACCCAATTAAGCAGGCCAAGTACTGGCCCTGATATGGTGCCCCAATCAAATCTTATATCTGCATCTGGTGGTGACGACAAGTTCA CAGTAAGAGAACTTCTATCACCAGTTTCAGAAACCACTCCTTCCATTACCTCACCAATGTCAACGAGCCAAAAGAATTTGCAGTCAGAAAAAGCTGCCAT TTTACAAAATTCAACTGTTGAAAAACCCACTGCTGCCCATCTGTCTCCTGCTTTTGATGATGTAATACATGTTATACGGCACAGTAGTTTCCGTGTTGGG ACCGAGCAGCCAGCTATGGAAACTGTGGAGATGGGGATTCAAAATGTGGATGTGGGAAAGCTATTAAATGTAGTAGGAGATGAACTCGAAATGAGAAATG TGAGTACGCCGATGGCTCTAAAATCATCAAATTGCTCTGAAGCTGTGAGTTTGAAATCAAGTCTTTCAGATCATTTCAGCATTAAAGAAATTGATTTGAG AAACATCAGCCCTCTGGTTCCACAATTTGATTTATCGGAGCTACCAAAATCCAACTCCCCTGTCACTGAAGAGGAAGCAGCAGCAAGGGAAACTTTGGAT GTTAAATCTTTCAGGCAGAGGGCAGAGGCACTTGAAGGACTTCTAGAATTGTCTGCTGATTTGCTTCAGCAAAGCAGGTTAGAAGAGCTTGCGGTTGTTT TAAAACCTTTCGGGAAAGATAAAGTCTCTCCAAGGGAGACAGCTATCTGGTTAGCTAAGAGTCTGAAAGGAATGATGGCCGAGGACAGCGGACGGAGTTC ATGA
AA sequence Show only first row Show all	>Potri.009G020100.1 pacid=42770818 polypeptide=Potri.009G020100.1.p locus=Potri.009G020100 ID=Potri.009G020100.1.v4.1 annot-version=v4.1 MESRMDQYEIMEQIGRGAFGAAILVHHKSERKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKS NGVYFPEEKLCKWFTQLLLAVEYLHGNFVLHRDLKCSNIFLTKEQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCMYEM AARRPAFKAFDMAGLISKINRSSIGPLPSCYSPSLKTLIKGMLRKNPEHRPNASEILKHPYLQTYVDQYRPSFSPPTSCSPEKPIPRSRESRRSMDESQT SNSSSSDKDSLPSSDRNIPAVVSNCDTKATDTDLASVGDEDGTKEPMPSEEERGPNVCIVKMNEQRVMKPSHNEHGCNVEPKQPKTIKGIMMALKEGKPR ENSSSSRGNHTKSGSAPTQRSNIEASPKPLIPNALASGLKSNADTPTVAPAKAALDSAKQVQGSHPLKHQLPIIESSPKTKLRHDGTPPPGPIKHVDDGL AMKPRQRTPNLFRRSSFPGRTRQTGADVPNGNMKLSPTEKNQEPENTYQVPDGRPYFSKEVSQESQKALFRACKGKQAESSNSVSSSMSIQSFELCDDAT TPFVAMPEQTLPNHEAVICTESLENHPPGCSPATTLHSGMSENLSWENSACAGCAHKSILCSEETSDVVTDLHKKTVGDGREGVSSALNLIVSSFEERFI CKDTNTQLSRPSTGPDMVPQSNLISASGGDDKFTVRELLSPVSETTPSITSPMSTSQKNLQSEKAAILQNSTVEKPTAAHLSPAFDDVIHVIRHSSFRVG TEQPAMETVEMGIQNVDVGKLLNVVGDELEMRNVSTPMALKSSNCSEAVSLKSSLSDHFSIKEIDLRNISPLVPQFDLSELPKSNSPVTEEEAAARETLD VKSFRQRAEALEGLLELSADLLQQSRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGMMAEDSGRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	0	1
AT1G32190			alpha/beta-Hydrolases superfam...		Potri.001G136400 [exp]	3.87	0.8611
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.001G357100 [exp]	4.58	0.8169
AT3G56640		SEC15A	exocyst complex component sec1...		Potri.016G032100 [exp]	5.47	0.8330
AT5G62890			Xanthine/uracil permease famil...		Potri.015G072600 [exp]	6.63	0.8242
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	10.48	0.8166
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069300 [exp]	10.67	0.7928
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Potri.014G162900 [exp]	11.18	0.7713
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	11.35	0.8540
AT1G20540			Transducin/WD40 repeat-like su...		Potri.002G011200 [exp]	13.56	0.8563
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G049700 [exp]	17.32	0.8170

Compare expression of checked genes

Potri.009G020100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.