Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 511 / 5e-166 TMK1 transmembrane kinase 1 (.1) AT2G01820 506 / 5e-164 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 478 / 1e-153 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 436 / 3e-138 Leucine-rich repeat protein kinase family protein (.1) AT2G17220 240 / 3e-70 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G68690 246 / 1e-69 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G23540 245 / 3e-69 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G58690 232 / 9e-68 Protein kinase superfamily protein (.1) AT1G20650 231 / 2e-67 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G56145 243 / 7e-67 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217700 [exp] 1508 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.016G070500 [exp] 671 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 667 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.017G134900 [exp] 526 / 4e-172 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 522 / 3e-170 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 509 / 1e-165 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G137801 [exp] 504 / 2e-163 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 497 / 8e-161 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 478 / 2e-153 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021275 [exp] 603 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 592 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10013342 [exp] 556 / 0 AT2G01820 685 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10001851 [exp] 541 / 2e-177 AT2G01820 693 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039038 [exp] 530 / 3e-173 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 530 / 9e-173 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 482 / 9e-155 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003807 [exp] 469 / 1e-149 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 459 / 3e-146 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 459 / 4e-146 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G020400.1 pacid=42772605 polypeptide=Potri.009G020400.1.p locus=Potri.009G020400 ID=Potri.009G020400.1.v4.1 annot-version=v4.1 ATGGGAGGTGAAAGTATGAAGCTTTGCAACATTGTATGTTTTTTGTTGGGTTTCGTTACTTTGTGTTATAGTTTTACGGATCCCAATGACCTTAAGATCT TGTTAGATTTCCAGAATGGGTTGGAAAATCCAGAGCTTCTCAAATGGCCAGCCAAGGGTAACGATCCTTGTGGCCCTCCTTCATGGCCTCATGTTTTCTG TTCGGATGGCAGAGTCACACAAATTCAGGTCCAAAATATGGGTCTTAAAGGACCCCTCCCTCAAAATTTCAACCAGCTCTCAAAACTTTACAATATAGGG CTTCAAAGAAACAACTTCAATGGAAAACTACCCACCTTTAAAGGACTGTCTGAACTGGTATATGCTTTCTTGAATGGCAATAATTTTGACACTATCCCAT CTGATTTCTTTGAGGGACTTAGTAGCATAGCGGTTTTGGCCTTGGATGGCAATAGTTTGAATGAGAGTACAGGATGGTCTCTGCCCAGTGAATTGGCAAG TTCTGTTCAGTTGACGAATTTTTCAGTGTCTTCATGCAATTTGGCTGGTCCATTGCCTGATTTTCTAGGCAGCATGCCATCTCTTAGTAATCTAGAACTT TCTTACAACAGATTGTCTGGTGAAATTCCTGCAAGTTTTGGGCAATCTTTGATGTCAATTTTGCTTCTGAATAATCAAGAAGGAGGGGGCATGAGTGGTT CAATTGATGTTATCGCAAACATGACATCATTGTCACAATTATGGCTTCATGGGAATTCTTTCTCTGGAACAATACCTGAGAAAATTGGAGATTTGTCTTT GTTGAGAGATCTTAATCTCAACGGAAACAAACTTGTCGGTTATATTCCTCAGAGCTTGGCAGATATGCAGCTGGAGAATTTGGACTTGAACAATAATCAG CTAATGGGTCCAGTGCCAGTGTTCAAGGCTGGTAAGGTTTCTTATGACTCCAATCCTCTTTGTCAATCTAAACCTGGAGTTGAATGCGCCCCAGAAGTTT ATGCACTTTTGGATTTTCTTAGTGGAGTGAATTATCCTTCAAATATTGCTCCTCAGTGGTCTGGTAATGATCCATGTCATGGGCCATGGTTGGGATTGAA TTGTGATTCTAATTCAAAGGTTTCTGTTATAAATCTGCCTAGACGTAATCTTACTGGCACCCTTAATCCTTCAATTGCAAAATTAGATTCACTGGTTCAA ATTGGACTTGGAGGAAACGATATAGAGGGCACAATTCCCAGCAATTTGACAAACTTAAAGTCTTTGAGATTGTTCGATGTCAGTGAAAACAATCTAGGTC CTCCTTTGCCCAAGTTTCGGAATAGCGTGAAGCTTGTTGTTGATGGAAATCCTCTTCTGGTTGGTGGGAATCAGAGTCAGCAATCCCCCTCCCCTGCTAG CAGCCTACCTCCTGTGAGTTTCACTCCACCAGAGAATTCTCCACCAGAGAATTCTCCACCAGGCAGTGCACAGCCTTCACCATTCACTATGCCTTCTAGT CCGCCTTCTCCAACTTCAAGCTCACACGCTAATCGGTCTACTTCTACAAAAGTTCCAGCCCAAACTAAAAGAAACTTTGAAAGAACCAAACTAGTAATTG TGGGTGGAATTTTAGCCGGTTCATTGCTGGCTGTTGTGTTGATTGCTTTGTGTCTATATTCTTGCTTTAAGAAGAAAAAAGAAACTTCAAATCCTCCTTG TTCCATTGTGGTTCACCCTAGAGATCCATCTGATTCAGAAAATTTTGTCAAGATTGCAGTTTCCGACAACATCACTGGAAGCTTGTCCACTCAAACTGGA ACTAGTTCTGTCAGTAATACAAGTAGTCTGACTGAAAATTCCCGTGCAATTGAGGCTGGAAATGTTATTATATCTGTCCAAGTTCTTCGCAAGGTGACAG ATAATTTTGCCCAAAAAAATCAGCTTGGCTCTGGTGGATTTGGAACTGTCTACAAGGGTGAATTGGAAGATGGGACAAAAATAGCTGTTAAGAGAATGGA GGCCGGAGTGGTGAGTGGTAAAGCTGTGGATGAATTTCAGGCTGAGATTGCTGTTCTTTCTAAAGTCCGGCATCGGCATCTGGTTTCTCTTCTTGGTTAT TCTATCGAAGGCAATGAAAGACTTCTTGTCTACGAGTATTTGTCAGAAGGTGCTTTAAGCATGCATCTTTTCCATTGGAAGAAATTAAACTTGGAGCCTC TATCTTGGACAAGAAGGTTGAGTATTGCATTGGATGTGGCCCGGGGGATGGAATATCTTCACAGTCTGGCTCGACAAACATTTATTCACCGAGATCTCAA ATCTTCCAACATTCTTCTAGGTGATGATTTCCGTGCCAAGGTTTCTGATTTCGGGTTGGTGAAACTTGCTCCAGACGGAGAGAAATCTGTTGTGACGAGA CTTGCTGGAACCTTTGGCTACCTTGCACCTGAATATGCTGTTATGGGGAAGATAACAACCAAAGCTGATGTGTTCAGCTATGGAGTGGTGTTAATGGAAC TTTTGACCGGGTTAACAGCCCTTGATGAGGAGCGCTCTGAGGAAAGCCGATACTTGGCTGAGTGGTTTTGGAAAATCAAATCAAGCAAAGAGAAGCTTAT GGCTGCCATTGACCCTACTCTTAATGCCAGTGAAGAGATTTTTGAGAGCATCTACACCATAGCTGAATTGGCTGGGCATTGCACTTTGAGGGAACCAAAC CACCGACCTGATATGGGTCATGCAGTGAATGTGTTGGCGCCACTTGTTGAGAAATGGAAACCAATTAACGACGAATCCGAGGACTTTTCTGGCATCGACT ACAGCCTTCCACTTCCAGAGATGTTAAAAGTTTGGCAGGATGGAGAAAGCACTGGGCGAAGTTATACCAGTCTTAATGACAGCAAGAGCAGTATTCCAGC AAGACCAGCTGGGTTTGCTGAGTCCTTCACATCTGCTGATGGTCGTTAA
AA sequence Show only first row Show all	>Potri.009G020400.1 pacid=42772605 polypeptide=Potri.009G020400.1.p locus=Potri.009G020400 ID=Potri.009G020400.1.v4.1 annot-version=v4.1 MGGESMKLCNIVCFLLGFVTLCYSFTDPNDLKILLDFQNGLENPELLKWPAKGNDPCGPPSWPHVFCSDGRVTQIQVQNMGLKGPLPQNFNQLSKLYNIG LQRNNFNGKLPTFKGLSELVYAFLNGNNFDTIPSDFFEGLSSIAVLALDGNSLNESTGWSLPSELASSVQLTNFSVSSCNLAGPLPDFLGSMPSLSNLEL SYNRLSGEIPASFGQSLMSILLLNNQEGGGMSGSIDVIANMTSLSQLWLHGNSFSGTIPEKIGDLSLLRDLNLNGNKLVGYIPQSLADMQLENLDLNNNQ LMGPVPVFKAGKVSYDSNPLCQSKPGVECAPEVYALLDFLSGVNYPSNIAPQWSGNDPCHGPWLGLNCDSNSKVSVINLPRRNLTGTLNPSIAKLDSLVQ IGLGGNDIEGTIPSNLTNLKSLRLFDVSENNLGPPLPKFRNSVKLVVDGNPLLVGGNQSQQSPSPASSLPPVSFTPPENSPPENSPPGSAQPSPFTMPSS PPSPTSSSHANRSTSTKVPAQTKRNFERTKLVIVGGILAGSLLAVVLIALCLYSCFKKKKETSNPPCSIVVHPRDPSDSENFVKIAVSDNITGSLSTQTG TSSVSNTSSLTENSRAIEAGNVIISVQVLRKVTDNFAQKNQLGSGGFGTVYKGELEDGTKIAVKRMEAGVVSGKAVDEFQAEIAVLSKVRHRHLVSLLGY SIEGNERLLVYEYLSEGALSMHLFHWKKLNLEPLSWTRRLSIALDVARGMEYLHSLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTR LAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLTALDEERSEESRYLAEWFWKIKSSKEKLMAAIDPTLNASEEIFESIYTIAELAGHCTLREPN HRPDMGHAVNVLAPLVEKWKPINDESEDFSGIDYSLPLPEMLKVWQDGESTGRSYTSLNDSKSSIPARPAGFAESFTSADGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.009G020400 [exp]	0	1
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.019G033000 [exp]	10.04	0.7367
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.004G189000 [exp]	10.29	0.7301	Pt-ATCSLA02.2
AT4G13990			Exostosin family protein (.1)		Potri.001G321000 [exp]	13.63	0.7261
AT3G13690			Protein kinase protein with ad...		Potri.001G200000 [exp]	14.00	0.6655
AT2G22900			Galactosyl transferase GMA12/M...		Potri.007G005900 [exp]	16.61	0.7232	Pt-GT6.1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395400 [exp]	18.16	0.7243
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.010G095200 [exp]	26.83	0.6810	Pt-CYCD1.1
AT1G34300			lectin protein kinase family p...		Potri.019G086300 [exp]	33.67	0.7086
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.001G187500 [exp]	34.46	0.7251
AT4G22730			Leucine-rich repeat protein ki...		Potri.001G117800 [exp]	34.92	0.7043

Compare expression of checked genes

Potri.009G020400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.