Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08400 712 / 0 RINT-1 / TIP-1 family (.1) AT3G47700 460 / 4e-150 MAG2 maigo2, RINT-1 / TIP-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063100 [exp] 464 / 1e-151 AT3G47700 872 / 0.0 maigo2, RINT-1 / TIP-1 family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036104 [exp] 904 / 0 AT1G08400 687 / 0.0 RINT-1 / TIP-1 family (.1) Lus10024240 [exp] 497 / 3e-164 AT3G47700 922 / 0.0 maigo2, RINT-1 / TIP-1 family (.1) Lus10023609 [exp] 483 / 6e-159 AT3G47700 918 / 0.0 maigo2, RINT-1 / TIP-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04437 [poplar] [flax] RINT1_TIP1 RINT-1 / TIP-1 family
Representative CDS sequence Show only first row Show all	>Potri.009G020600.1 pacid=42771806 polypeptide=Potri.009G020600.1.p locus=Potri.009G020600 ID=Potri.009G020600.1.v4.1 annot-version=v4.1 ATGGATTCTCCTCCTCCTCCTACGCCACCACCACTACAACAGCTACCGTTTCAAGTTCTGCCCAGAAGAAGTGAGCTCTCTTCACAGAACATACAGTTTC TTGATCAAAATTTAGTAACCCATCAAGATCTACTCGTCAGGGCTCCTCTCCTCTTATCTGATTTAACAAAAGAACGCTCCAATTTCGATGCCCATCTTTT GAACTTACGGAGAAAACTCACCGAACTGGCTGTTTCGTGGATTTCTCGCTCGTTTAGTGCTAAATCATCACTTTCCAAAGTCAATTTCATGTTGGAAAAT CTGAGTCTCCAAACCTCTCAATATGGGATTGGTTCATGGAAAGTAGGGAAGGTTCTGGTTGAGGAGATCCCAAAACTTGCTAAACAGGTTCAAAGAATTG AAAATATACTGAAATATATTGATACTGCCTTGCAGTTGGAAGCTCTGGTTGGAGATCTTGAAGATGGGGTTTTCTGTGTCGGTGGTCTCCATGCTCGGAA TTTGTTTTCAGAAAAGCGCCAAACTTCTTTGAAGTCAATGGACTTTGGACCAAAGCTAGAAAGGATACTTGAAGCCATAAAAACGATGAACAACATTGAG GAAGTATTGGTTAACATTAAGAAATTTCAAGCTCAGTGGCATCGTCTTTTGGAATCTGTTGATGCTAGAGTTGATAAAATTTTAGTTGTTGTTCGGCCAC AAGTTCTTGCTGATCACCGGGCTCTTCTTTCTTCCCTAGGCTGGCCGCCCAAACTTCTAACACCAAAAATAGACAGTGGGGATATTGCTGGCCTTTCGTA TCCACTGGTTTTAATGCAAGGAGACAAAAGTAAATGTTATTCTCAAACATTTTTAGCTCTTTGTTCTTTGCAGCATCTGCAGAGACGAAGGGAAGATCGA CAGCATAACATTATCGAACAAAGGGAGTGTGGCATAGGGCTTTGGGCCATTGATGAACTAGTTTCTCCCATTGCATCACGAATGGAATACCACTTCTCTA AATGGGCTGAGCAGCCTGAACTTATTTTTGCTCTTGTCTATAAGATTACAAAAGACTTTATTGTAGGAGTAGATGATGTTTTGCAGCCTTTGATTGACAA AGCAAGGTTGAGGAGCTGCAGTGCTAAAGAAGCGTGGGTTTCTGCAATGGTCCAGATGCTTTCCGGGTTTCTAGCAAAAAGCGTTTTTTCTGTTCATGCT GAAAGATACAAGGATAAACAAGTTAGATCAGAAGTAAGTACATCATGGCTTCATTTGATAGACCATATTGTTTCTTTTGATAAACGGATGCAATCACTTT TAAGCTCAGAAACTCCTTTCTTCTTAGAGGAGCCTAAAAGGTTTGAAGGGCTCTCCAGAGGCCTGTCAGTGTTAACAATATTTTGTGATAGGCCAGAGTG GCTCAAGATTTGGTCTACAATAGAGCTGAAGGATGCATGGAAGAAAATAAAACCTGTACTGAAAGATGAAAGAGCTTGGATAATTGATAAGGAGGAATGT GATGTTGTAGTTGGTACAGAATCTAAACATTTTGTACTCTCTTCTAGAGGAGACCATAAAGCTCCAATAGTAGCAGAATCAGCCCTGAAAATAGCCTGGG AGATGATTGAACGATGCCAAACTTTGCCTTCTCTTCAACACCGTATTCGCTTTATCAGATCAACTGCAGCGAGATTCTTTTGGTATTTTCTTAATGGATT GGTCTTGCGGTGCAAGAATACTGACTTTTCTCTTGAAAATATGGATGCCTCCTTAATCAAGGTATGTGGATCAATCAATGCTGCTAGATATATTGAATCT AAACTGCAAGAGTGGAGTGATGATGTTAACTTTTTAGAGATGAGAATTGCTGAAAAGGATTTTGACATTGATGGAAATAATGAGGTTTTGGGTGATAGTT GCTTCTTTGGGGAAGAAATCAAAAGTTTGGAAGAGCTTATGACTAACTGGCTCATGGAGATAATCACTGCTCTTCTTCATCATTTTGAAACCCTTTCCTG GGAATATCTGCAAAATGGGAGATTTTTTGTGCAAGAGAGATATGTGAATTTAAATAGAGTTCCAGCAGTCACCGATTTAGCAGTATCATTTGGCATTGTA CAAGCATTGGATGCTCTGAAAAGTCAGCTTCATCTTGGTAAGACGGGTCTCAACCCGAAAGACTTCTTGGATTTATGGAGAAGTGTTGCTGATGCGCTTG ATCAATTTGTTTCTCGCAGCATTTTCACAAGTGGTATTCGATTTTCTAATGAAGGGATCAATCAGTTTGATTCTGATATGCAAGCATTGTTCCATGTTTT TCAACCATTTTGTTCTCGCCCTGAAGCTTTTTTCCCTAGTATTAGAGAAATTCTTAAGCTGTTAAAAATGAGTAAGGAAGAAGCAAAACTTTTGCTAGTA GCTTTGTCCAAAAATAAAAATGGGACAAAATGCTTGCATTCTCTAGGAATTTCACACTTATCTTTTGATCAAGTTGACAAAGTTTTGAGTAATAGAAGGT GTAGATCTTGGTCTTGA
AA sequence Show only first row Show all	>Potri.009G020600.1 pacid=42771806 polypeptide=Potri.009G020600.1.p locus=Potri.009G020600 ID=Potri.009G020600.1.v4.1 annot-version=v4.1 MDSPPPPTPPPLQQLPFQVLPRRSELSSQNIQFLDQNLVTHQDLLVRAPLLLSDLTKERSNFDAHLLNLRRKLTELAVSWISRSFSAKSSLSKVNFMLEN LSLQTSQYGIGSWKVGKVLVEEIPKLAKQVQRIENILKYIDTALQLEALVGDLEDGVFCVGGLHARNLFSEKRQTSLKSMDFGPKLERILEAIKTMNNIE EVLVNIKKFQAQWHRLLESVDARVDKILVVVRPQVLADHRALLSSLGWPPKLLTPKIDSGDIAGLSYPLVLMQGDKSKCYSQTFLALCSLQHLQRRREDR QHNIIEQRECGIGLWAIDELVSPIASRMEYHFSKWAEQPELIFALVYKITKDFIVGVDDVLQPLIDKARLRSCSAKEAWVSAMVQMLSGFLAKSVFSVHA ERYKDKQVRSEVSTSWLHLIDHIVSFDKRMQSLLSSETPFFLEEPKRFEGLSRGLSVLTIFCDRPEWLKIWSTIELKDAWKKIKPVLKDERAWIIDKEEC DVVVGTESKHFVLSSRGDHKAPIVAESALKIAWEMIERCQTLPSLQHRIRFIRSTAARFFWYFLNGLVLRCKNTDFSLENMDASLIKVCGSINAARYIES KLQEWSDDVNFLEMRIAEKDFDIDGNNEVLGDSCFFGEEIKSLEELMTNWLMEIITALLHHFETLSWEYLQNGRFFVQERYVNLNRVPAVTDLAVSFGIV QALDALKSQLHLGKTGLNPKDFLDLWRSVADALDQFVSRSIFTSGIRFSNEGINQFDSDMQALFHVFQPFCSRPEAFFPSIREILKLLKMSKEEAKLLLV ALSKNKNGTKCLHSLGISHLSFDQVDKVLSNRRCRSWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08400			RINT-1 / TIP-1 family (.1)		Potri.009G020600 [exp]	0	1
					Potri.003G065701 [exp]	15.96	0.8468
AT1G16770			unknown protein		Potri.004G169900 [exp]	16.00	0.8793
					Potri.010G010851 [exp]	21.90	0.8717
					Potri.005G236901 [exp]	31.52	0.8622
AT2G26530		AR781	Protein of unknown function (D...		Potri.001G274000 [exp]	42.86	0.8498
AT5G66910			Disease resistance protein (CC...		Potri.007G039201 [exp]	46.30	0.8459
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Potri.001G342700 [exp]	48.29	0.8246
AT2G02955		MEE12	maternal effect embryo arrest ...		Potri.010G169500 [exp]	49.95	0.8441
					Potri.014G163733 [exp]	55.80	0.8448
AT5G20940			Glycosyl hydrolase family prot...		Potri.009G154032 [exp]	58.65	0.8446

Compare expression of checked genes

Potri.009G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.