Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14370 447 / 3e-156 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT2G02800 436 / 6e-152 Kin2, APK2B protein kinase 2B (.1.2) AT1G69790 429 / 8e-150 Protein kinase superfamily protein (.1) AT1G26970 413 / 3e-143 Protein kinase superfamily protein (.1) AT5G02290 412 / 3e-143 NAK Protein kinase superfamily protein (.1.2) AT1G07570 400 / 6e-138 APK1A Protein kinase superfamily protein (.1.2.3) AT2G39660 397 / 6e-137 BIK1 botrytis-induced kinase1 (.1) AT2G28930 394 / 1e-135 APK1B protein kinase 1B (.1.2.3) AT3G55450 392 / 4e-135 PBL1 PBS1-like 1 (.1.2) AT5G15080 392 / 7e-134 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148000 [exp] 449 / 5e-157 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.010G093700 [exp] 444 / 3e-155 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.016G094300 [exp] 421 / 1e-146 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 414 / 3e-143 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.009G031300 [exp] 409 / 1e-141 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 409 / 2e-141 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G240400 [exp] 405 / 3e-140 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.017G077300 [exp] 391 / 2e-133 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 391 / 2e-133 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022591 [exp] 585 / 0 AT2G02800 462 / 2e-162 protein kinase 2B (.1.2) Lus10021489 [exp] 558 / 0 AT2G02800 459 / 3e-161 protein kinase 2B (.1.2) Lus10012850 [exp] 440 / 2e-153 AT2G02800 614 / 0.0 protein kinase 2B (.1.2) Lus10023794 [exp] 426 / 7e-149 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030496 [exp] 420 / 3e-146 AT2G02800 551 / 0.0 protein kinase 2B (.1.2) Lus10024391 [exp] 420 / 4e-146 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 418 / 3e-145 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016537 [exp] 407 / 1e-140 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10002697 [exp] 405 / 2e-140 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 403 / 2e-139 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.009G020700.2 pacid=42771457 polypeptide=Potri.009G020700.2.p locus=Potri.009G020700 ID=Potri.009G020700.2.v4.1 annot-version=v4.1 ATGGGAAACTGTGTGAGGAAGCCTGTTAAGTGTGCTCATGCTTCTTCCAGTAATTTTCCTCCATCTGGAGCTACAAAGCCTAATGGTGATGCAAAGCAAG TTTCAACCTCTCCTAGCGGGGAATCATCATTTAGAAGCTTGAACAAATCTTTGATTGCATCCAAAGTTGATGTATCTGCACATAGCAATCTCAAGTCCTT TAGCTTTACTGATTTGAAGAATGCCACCAAGAACTTCCGTTCAGAAACTTTGCTCGGAGAGGGAGGTTTTGGGTGTGTTTTCAAAGGATGGATTGACTTG AACACATTTGCTCCAACCAAACCTGGAAGTGGAGTTATTGTTGCAGTCAAGAAGCTCAAGCCAGAAAGCTGTCAGGGTCACAAGGAGTGGCTTACAGAAG TAACCTATCTCGGTCAGCTTCATCATGAAAATCTAGTGAAACTCATTGGGTATTGTTCCGAGTCTGATAATAGACTTCTAGTCTATGAATTTATGCCGAA GGGAAGTTTGGAGCAACATTTATTTAGAAAAGGTGTTCAGCCTATCACTTGGACTATGAGAATGAATATTGCAATTGATGTAGCAAGGGGGTTGTCCTTC TTGCATGGGTTGGATGCCAATGTAATCTATCGCGACTTGAAGGCATCCAATGTTCTACTTGATTCGGATTATAATGCTAAGCTTTCAGATTTTGGCTTAG CAAGGGATGGCCCTACTGGAGATAACACACACGTGTCAACCAAGGTTTTGGGAACTCGGGGCTATGCTGCGCCGGAGTATGTAGCCACAGGTCATTTGAC CCCGAAGAGTGACGTGTACAGCTATGGTGTTGTCTTGTTAGAGTTGCTATCAGGCCGAAGGGCAATGGATGAAGAGAGAGGCGGTTTTGACGACGAAACC CTGGTGGATTGGGCGAAGCCTTTCTTGATTGACAGTAGGCGAGTTTTGAGAATCATGGACACTAGACTGGGTGGACAGTACCCTAAGAAAGCAGCCCAAG CAGCGGCTGCACTCGCGTTACAGTGCCTGCACACAGATCCCAAGAACAGGCCACCCATGATTGATGTTCTAACAACTTTAGAAAAACTCATCACATCAAA GGACATCCCAAGAACAGCACGTCCAGTTAAGCTGGATAATCATGGGATCAAGCCTATGAACAGCTCTTACAGGATAACCAAAACATAA
AA sequence Show only first row Show all	>Potri.009G020700.2 pacid=42771457 polypeptide=Potri.009G020700.2.p locus=Potri.009G020700 ID=Potri.009G020700.2.v4.1 annot-version=v4.1 MGNCVRKPVKCAHASSSNFPPSGATKPNGDAKQVSTSPSGESSFRSLNKSLIASKVDVSAHSNLKSFSFTDLKNATKNFRSETLLGEGGFGCVFKGWIDL NTFAPTKPGSGVIVAVKKLKPESCQGHKEWLTEVTYLGQLHHENLVKLIGYCSESDNRLLVYEFMPKGSLEQHLFRKGVQPITWTMRMNIAIDVARGLSF LHGLDANVIYRDLKASNVLLDSDYNAKLSDFGLARDGPTGDNTHVSTKVLGTRGYAAPEYVATGHLTPKSDVYSYGVVLLELLSGRRAMDEERGGFDDET LVDWAKPFLIDSRRVLRIMDTRLGGQYPKKAAQAAAALALQCLHTDPKNRPPMIDVLTTLEKLITSKDIPRTARPVKLDNHGIKPMNSSYRITKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14370		Kin1, PBL2, APK...	PBS1-like 2, kinase 1, protein...		Potri.009G020700 [exp]	0	1
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.012G001400 [exp]	1.73	0.8873	NAC015
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Potri.001G316300 [exp]	2.00	0.8959
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.010G240800 [exp]	4.47	0.8837
					Potri.009G055800 [exp]	5.09	0.8887
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.005G119400 [exp]	5.91	0.8674
					Potri.005G129350 [exp]	6.00	0.8838
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.001G029700 [exp]	7.48	0.8668
					Potri.014G022200 [exp]	8.94	0.8428
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.008G154800 [exp]	10.95	0.8640
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093833 [exp]	13.56	0.7891

Compare expression of checked genes

Potri.009G020700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.