Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25200 108 / 3e-29 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT5G51440 102 / 1e-26 HSP20-like chaperones superfamily protein (.1) AT4G27670 65 / 1e-12 HSP21 heat shock protein 21 (.1) AT1G07400 49 / 2e-07 HSP20-like chaperones superfamily protein (.1) AT1G53540 48 / 8e-07 HSP20-like chaperones superfamily protein (.1) AT1G59860 42 / 5e-05 HSP20-like chaperones superfamily protein (.1) AT1G52560 42 / 0.0001 HSP20-like chaperones superfamily protein (.1.2) AT5G37670 40 / 0.0002 HSP15.7CI HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G109200 [exp] 115 / 6e-32 AT4G25200 191 / 2e-61 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.003G076000 [exp] 97 / 9e-25 AT4G25200 130 / 7e-38 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.006G034600 [exp] 50 / 1e-07 AT5G51440 68 / 2e-14 HSP20-like chaperones superfamily protein (.1) Potri.010G053400 [exp] 50 / 3e-07 AT4G27670 141 / 2e-41 heat shock protein 21 (.1) Potri.009G049900 [exp] 49 / 4e-07 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 47 / 2e-06 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.012G022400 [exp] 47 / 4e-06 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.018G140600 [exp] 45 / 6e-06 AT1G07400 116 / 8e-34 HSP20-like chaperones superfamily protein (.1) Potri.006G073500 [exp] 44 / 2e-05 AT1G07400 113 / 2e-32 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031154 [exp] 115 / 9e-32 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10031730 [exp] 112 / 1e-29 AT4G25200 215 / 3e-69 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10028937 [exp] 58 / 1e-09 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10042408 [exp] 48 / 1e-06 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 46 / 6e-06 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10006444 [exp] 44 / 4e-05 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10011385 [exp] 43 / 8e-05 AT4G27670 133 / 9e-39 heat shock protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.009G021400.1 pacid=42771130 polypeptide=Potri.009G021400.1.p locus=Potri.009G021400 ID=Potri.009G021400.1.v4.1 annot-version=v4.1 ATGGCGTCTCCTACCCAACTCATGAAACCTGCTCCTTCTCCTCTAAAGATCATCCCTGCTCCTGCTACTGGTAATGGTACCAGCTTTACCTTCCGCCCAA TTCCTACTAGTACTGCTCCTCCAGCTACTATCCTCCTCAACACTGACACTCTCCGCGACTTTGACAACCACTATGTCCACAGAGACCCTGCTTTTGGCTT TGACCGCAGCTACTGTGTAGGCTTCCCTCGCAGCAGTGATGACTCTCTCTCTGCACCAAGGAGCCACAACCAAGTGATGAACTTGATGGATCCGTTCATG GCCAATCCTTATCCAGTCGGTCCGCTACTCCTTTCTGCAGCCATCCCTGGCCGGAAGCGCGGACACAGCTGGGACGCGTATGAGACTGATGTTGCTCTGA ATATCAGCATTGACATGCCTGGACTTGACAAGGAGGATGTAAAGATCACCGTGGAGCAGAATAGCCTGCTTATCAAAGGCGAAGGCAAAAAGGAAAAAGA TGATGATGATAACGATGAAAAGATGGCTGATAAGGGCAGGAAGTTTTGTGGCAAGATGGATTTGCCAGCTGGGAAGAGGTACAAGACTGGCGAGATTAAA GCTGAGATGAAGAATGGGGTTTTGAAGATGGTGGTTCCTAAGGTGAAAGAGGATGACAGGATCGATGTTCTTCTGGTCAAGGTTGAGTAG
AA sequence Show only first row Show all	>Potri.009G021400.1 pacid=42771130 polypeptide=Potri.009G021400.1.p locus=Potri.009G021400 ID=Potri.009G021400.1.v4.1 annot-version=v4.1 MASPTQLMKPAPSPLKIIPAPATGNGTSFTFRPIPTSTAPPATILLNTDTLRDFDNHYVHRDPAFGFDRSYCVGFPRSSDDSLSAPRSHNQVMNLMDPFM ANPYPVGPLLLSAAIPGRKRGHSWDAYETDVALNISIDMPGLDKEDVKITVEQNSLLIKGEGKKEKDDDDNDEKMADKGRKFCGKMDLPAGKRYKTGEIK AEMKNGVLKMVVPKVKEDDRIDVLLVKVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.009G021400 [exp]	0	1
AT1G51220	C2H2ZnF	AtWIP5, WIP5	WIP domain protein 5 (.1)		Potri.001G018900 [exp]	2.82	0.6761
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Potri.003G074100 [exp]	5.00	0.7221	Pt-UFO.1
					Potri.019G089200 [exp]	8.83	0.6827
					Potri.014G100650 [exp]	9.38	0.7108
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	13.07	0.7126
					Potri.009G067901 [exp]	14.28	0.6340
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	17.88	0.6890
					Potri.012G028432 [exp]	19.97	0.6798
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G027800 [exp]	23.87	0.6717
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	24.00	0.6748

Compare expression of checked genes

Potri.009G021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.