Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26920 411 / 5e-135 Ubiquitin-associated/translation elongation factor EF1B protein (.1) AT5G12120 345 / 4e-110 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225200 [exp] 919 / 0 AT2G26920 424 / 1e-140 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.001G033600 [exp] 377 / 5e-122 AT2G26920 267 / 2e-80 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.003G191600 [exp] 362 / 1e-115 AT2G26920 275 / 3e-83 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026781 [exp] 695 / 0 AT2G26920 468 / 3e-157 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10036096 [exp] 686 / 0 AT2G26920 473 / 6e-159 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10041640 [exp] 187 / 9e-52 AT2G26920 179 / 3e-49 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10024080 [exp] 184 / 1e-50 AT2G26920 181 / 3e-50 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G021900.4 pacid=42771850 polypeptide=Potri.009G021900.4.p locus=Potri.009G021900 ID=Potri.009G021900.4.v4.1 annot-version=v4.1 ATGACCAAGTTATTTGTCTTTTTTCACAACATACTAAATGTCTCGATCATTATTGTAGACATCACAGGAACATATTTGCCTTTTGAGATGTCTCCAGCAT CAAAATCTAAGTCAAAGGACAAAAAGGCTGGCAAGGAACCCCAGAAGGCTACATCAAAGCCTTCGGGAACTGCTAATGCAGGGAGTGGTATCTCAGCTAG CGCATACAATCCACTGTCTGGAACATTTCATACCATTGAAACAGTGTCGACATCCTCTGCCTCACCTCTACACAGTAATGGTCGTTTCCGAAACATAGAT GAGACAGATGATCATCCTGGTGGCTTGTTAGGAGCTGGGGTTGATTATGATTCTGTTTCAAATAATGGTAGCTGGTCTGGTGAGTCAGAAGATCAAAAAG AGAAGACTTCTAATCATCCAGTCCGGCAGGAAACAATACCAGGTGCTGACAATGACAAGCGGGAAAAAATCCGCCAGAAGAATGAGAAAAAGCATCAGCG TCAAAAGGAGAGGCGAGCACAAGAATTGCGTGAGCGGTGCACCGGCTATCTTATGTCGAGAAAGCTGGAAGCTCTAGCTCAACAGCTTGTTTCAATGGGA TTTTTGCATGAACGGGCAACAATGGCTCTTATATTGAATGAAGGAAAGTTAGAAGAATCTGTGACATGGCTGTTTGAAGTGGGTGAACATGCAGATAAGC ACAGGGATCAAAACCTTGGTGGGGGTACTTTGAAAATTGATATATCAGAAGAGCTTGCTCGGATTGCAGAAATGGAAATCAGATATAAGTGCACAAAGCA GGAGGTTGAAAGAGCTGTGGTTGCCTCTGAGGGTGATCTCGAGAAGGCCACGGAAAGTTTAAGACAACTGAAGCTAGATCCACCATCTGCTCCACCAAAA CCTGAGGAAACTGGTGATCCTCCGACCTCAAGCAGTGATAAGCTTTCTGTAGCAGGTAGCCAGAATATGGTGAGACCACAACCAAAGCTCAACCCAACTT CTTTGATACAGCAAAGAAGAGATAAAGATTTTAACTATACAAAAGCAGGTGTTCCAGTGGGAGGATCTTTGGAATCTGGGAGTAAAAATGAGCAGCCTTT GAAGAGAATACAACCGAAGTTGGATTGGCCAAAACCTCAGCCAACTCCGACTCCAACTGACAAAAGATGGCTAAGTGCGGGATCAAATCCTTCTGTTTCT TATTCTTTGGCATCTCCTTTGCAAGCGCCACCTCCACCTGCCAAGACAGAAACCCGTTATGTTACTGTTGGAAGTGAATATAAGAGCCTTCAGCCTGGAA CAGTTAGAGAACCAGTGATAATGATGCAGCGGCCTCAATCGATAAATTCAAAGCAGGTTCCAATTACAAGCATAAGCTCATCTCCTCCTGGGACAGCTGC CGGTTGGTATCCCACCAATAGAGTTGATATCATGAAGCCAAATGGCTTGATGCCTCCCATTCCTAGCACAAGAAGCCCCAGCCCAAACAATCAGATGTTC CACCAATTTCATTATCAACAACCACAGCATTTTGTTCCCAGCAATGGTCCAGGGGATTCTCCTGGAACCAGCAAAGTAAATGGGTTGTGGAGTAGAGCTG GTGCATCACCATCACTCGCTGCTGCTTCATCCCTTGGACTTTTCTCTGGATTGGGTTCCACAGGATCATCAGGGGCATCCTCTCCGGTTGATTGGAGCAC TTCTGGGTCGATGGCGCAGTTAGACTACACCAGCATAGACTGGAGTTTGGACCGAGGTTTATCTTCCCCGAGGCCTGGTGGATTTTGGTTAGGGCCAACA AATTTAAAGAGCAGCGCACAAACGTATGATTCTAGCAGCGCACAAACGTATGATTCTAGCAGCGCTTCTGGCTTTGGTGCCAGGCTGGCAATGAGATCAG CTCCCAGTGGCAATGGCATACCCGTTCCAGGATTGCAGGATGGTGGTGTGGCTAATTCAGAAACATCCACCCCCGGTTCCGTTGAATGGACTTCGCCATT TGAAGGGAACGATCTCTTTGGCTTGTCAAGACAGTTTGTTTCATCTCCTTCGCTGTAG
AA sequence Show only first row Show all	>Potri.009G021900.4 pacid=42771850 polypeptide=Potri.009G021900.4.p locus=Potri.009G021900 ID=Potri.009G021900.4.v4.1 annot-version=v4.1 MTKLFVFFHNILNVSIIIVDITGTYLPFEMSPASKSKSKDKKAGKEPQKATSKPSGTANAGSGISASAYNPLSGTFHTIETVSTSSASPLHSNGRFRNID ETDDHPGGLLGAGVDYDSVSNNGSWSGESEDQKEKTSNHPVRQETIPGADNDKREKIRQKNEKKHQRQKERRAQELRERCTGYLMSRKLEALAQQLVSMG FLHERATMALILNEGKLEESVTWLFEVGEHADKHRDQNLGGGTLKIDISEELARIAEMEIRYKCTKQEVERAVVASEGDLEKATESLRQLKLDPPSAPPK PEETGDPPTSSSDKLSVAGSQNMVRPQPKLNPTSLIQQRRDKDFNYTKAGVPVGGSLESGSKNEQPLKRIQPKLDWPKPQPTPTPTDKRWLSAGSNPSVS YSLASPLQAPPPPAKTETRYVTVGSEYKSLQPGTVREPVIMMQRPQSINSKQVPITSISSSPPGTAAGWYPTNRVDIMKPNGLMPPIPSTRSPSPNNQMF HQFHYQQPQHFVPSNGPGDSPGTSKVNGLWSRAGASPSLAAASSLGLFSGLGSTGSSGASSPVDWSTSGSMAQLDYTSIDWSLDRGLSSPRPGGFWLGPT NLKSSAQTYDSSSAQTYDSSSASGFGARLAMRSAPSGNGIPVPGLQDGGVANSETSTPGSVEWTSPFEGNDLFGLSRQFVSSPSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26920			Ubiquitin-associated/translati...		Potri.009G021900 [exp]	0	1
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Potri.017G119100 [exp]	3.16	0.8576
AT1G29760			Putative adipose-regulatory pr...		Potri.011G072200 [exp]	10.39	0.8359
AT3G13990			Kinase-related protein of unkn...		Potri.003G063300 [exp]	12.72	0.8400
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	13.03	0.8512
AT1G19370			unknown protein		Potri.014G180900 [exp]	14.49	0.8061
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Potri.004G111500 [exp]	15.09	0.8451
AT2G35230		IKU1	HAIKU1, VQ motif-containing pr...		Potri.001G142400 [exp]	16.27	0.8418
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.002G189700 [exp]	17.74	0.8056
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	19.67	0.8461	ELF5.2
AT5G56210		WIP2	WPP domain interacting protein...		Potri.011G169000 [exp]	22.04	0.8183

Compare expression of checked genes

Potri.009G021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.