Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12480 118 / 3e-31 CCAAT NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) AT5G19490 108 / 2e-27 CCAAT Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225400 [exp] 352 / 6e-122 AT3G12480 180 / 1e-54 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G033200 [exp] 151 / 2e-43 AT3G12480 221 / 7e-71 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.003G192100 [exp] 139 / 6e-39 AT3G12480 224 / 4e-72 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G106900 [exp] 41 / 0.0002 AT1G54830 112 / 6e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Potri.003G124500 [exp] 40 / 0.0004 AT1G54830 116 / 2e-33 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026780 [exp] 202 / 3e-63 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10041638 [exp] 133 / 5e-37 AT3G12480 204 / 9e-65 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10008701 [exp] 131 / 4e-36 AT3G12480 194 / 8e-61 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10026118 [exp] 115 / 7e-30 AT3G12480 181 / 9e-56 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10024082 [exp] 67 / 1e-12 AT3G12480 81 / 5e-18 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10008013 [exp] 41 / 0.0003 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10024515 [exp] 40 / 0.0005 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00808 [poplar] [flax] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Potri.009G022050.1 pacid=42770911 polypeptide=Potri.009G022050.1.p locus=Potri.009G022050 ID=Potri.009G022050.1.v4.1 annot-version=v4.1 ATGGTCCCCCTCCCCGCGCTTTCTATTTTCATGGGCTGCATTTATTTTCTTCAACTTGTCTTTCTTTATGTCAGCTCTGTTTCATTCATATTACTAATTA GATTTGTAATGAAATGTGCAGCTAAAGCTTTGGAACTCTTTTTGCAAGATCTATGTGACCGAACTTACGAGATCACTCTGAAAAGGGGAGCCAAGACCTT GAATTCATTGCATTTGAAACAGTGTGTACAGACTTTCAATGTATTTGATTTTCTGAGGGAAATTGTGAGCAAGGTTCCAGATTTAGGTGGTCCTGATGCT GCCTTTGATGAACATGGCATTGGCAAAAGAAGGAAAGTTGCTGATGATGAAGACAATGACAGTGACGAGGAGTGCAATAGAAGCAGAACACATGAGACTA CCCAGACAAGTAGCAGTGGCAGAGGTAGGGGCAGAGGTAGGGGCCGTGGCCGGGGGACGAGAGCCATGGAGAGGGAGAGAGCTGCACAGGATGGGAAGTT GGAAGATGAACCAGACATTGTTCATCATAATGACAAGCACAGTCCAAACCTTGGAAGGCTAGACAAGGATTACGTGCCTGAAGATTTGAAGGATAATATT CCAGCTGGAAGAAATTTACGAACACCAGTCCATGACTTTGACCTGAATTTGGACTTGGATGAGAATGGAGAAACAAAAACAGTGCTAGCTTCTGTCCCTG CAAGCTCCTCAACAAAACCTGACACTGTTGTCCCTGCAAGCTCCTCAACAAAACCTGACACTGTTGTCCCTGCAAGCTCCTCAACAAAACCAATTCCTGA ATTGAAGCACGAGGAAGTACCTGGATGGTCTCTAGCAGACATTGAAGGGATGGATATCGATCCCATTCAACTTGCGAACTTAAATACAAGAATAGACGAG GAAGATTATGATGAAGAAGAAGACTGA
AA sequence Show only first row Show all	>Potri.009G022050.1 pacid=42770911 polypeptide=Potri.009G022050.1.p locus=Potri.009G022050 ID=Potri.009G022050.1.v4.1 annot-version=v4.1 MVPLPALSIFMGCIYFLQLVFLYVSSVSFILLIRFVMKCAAKALELFLQDLCDRTYEITLKRGAKTLNSLHLKQCVQTFNVFDFLREIVSKVPDLGGPDA AFDEHGIGKRRKVADDEDNDSDEECNRSRTHETTQTSSSGRGRGRGRGRGRGTRAMERERAAQDGKLEDEPDIVHHNDKHSPNLGRLDKDYVPEDLKDNI PAGRNLRTPVHDFDLNLDLDENGETKTVLASVPASSSTKPDTVVPASSSTKPDTVVPASSSTKPIPELKHEEVPGWSLADIEGMDIDPIQLANLNTRIDE EDYDEEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.009G022050 [exp]	0	1
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Potri.003G072600 [exp]	10.48	0.7194
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.005G204800 [exp]	13.11	0.7533
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.001G154600 [exp]	23.06	0.6986
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019600 [exp]	25.00	0.7314
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.004G213400 [exp]	43.04	0.7010	SLP.2
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Potri.006G183700 [exp]	48.37	0.6919
AT2G47710			Adenine nucleotide alpha hydro...		Potri.014G130100 [exp]	49.29	0.6901
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.001G061200 [exp]	53.11	0.7113
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104200 [exp]	62.44	0.6635
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	63.11	0.7047

Compare expression of checked genes

Potri.009G022050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.