Plant FIBer expression Database

Potri.009G022200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12290 660 / 0 DGS1 dgd1 suppressor 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023345
[exp]
718 / 0 AT1G07970 736 / 0.0 unknown protein
Lus10038461
[exp]
710 / 0 AT5G12290 723 / 0.0 dgd1 suppressor 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08637 NCA2 ATP synthase regulation protein NCA2
Representative CDS sequence
>Potri.009G022200.1 pacid=42771448 polypeptide=Potri.009G022200.1.p locus=Potri.009G022200 ID=Potri.009G022200.1.v4.1 annot-version=v4.1
ATGGATTTGGAAGAGCATCGACGTACAAACGAGGAAGAAGACGAAACCGAAGCCAATAAGCAGAAAGGATTTATTCTCTCTGTCTACTTTCACTATCTCC
GCAACCGACTTGCTGCTCTCTTTCCCCTCTCTTTCCATGATTCCTCCGATTTTCTCTCCAGAATCTCCAATCTCTGCGTTCAAACCGGACGACGCGTCTT
TTTTCCTCGCAGACGACGCAAGGCTTGCCTCCCACTCCCTCTCCCTTCCAACACTCTCGATTCTTCTGTGGTTAGGATAGAGTCTTCGAGGGTGTATGAT
GTTTTGGAGGATATTATGGGGCATATTTTTATACATTTGCACAACATTCAAGATAATTTGCAATTTTGGCAACCTTTAATAGAGGCATCTAATGCTAGGA
AATTGTACTTTATGATTTTCGAGAGAGGGCCAAATGCTTTCCTTGGTGGAACAGCTAAGGTGTTGCGTCAAAGCATTGTTGACGGTTGGTCTATGCAGCA
TCTTAGTCAATTTGCTTCTGCTTATATTTCTGAGAGGATAGTTATCTTAAGCAACTTAAGATGTGCCATTGCTACATTCTTGGCCGAGGTTTACATGGAA
GTTGATAGACGTGGAGAGCAGTTAGTGGAAGATCCAGAAAAGTCATTTCCGCCATTACTAGCAGTTATTAATCATTTATTTTCAAATTTGGAGGCATCAA
TTGGCCATTTACATGCAATACGTCAGACTGATTCTTCTGTTGAAGGAAGCTATTCATTTCCACTTGTATTTGAGAAATCACCAAAAGTTAATCAAGAAGG
GTCTCAGTGGACAGATTGTGAAATCAGTGATGCCATCAATGCGGTTTATAAAAATCTTGAGAAATTGGACTCCTATATATCTGTTATGGTTTCCAAACAC
CAAAAGCCTAGTAAATTATCCCAGCACTGGATCCGCCACACATGTGGTGTAGTTGGCTTGTCATTTTGTTCCTCGTGGCTCCTTCGACATAGTCGTTTGA
TGGGAAGCCCTGATATTGACAACTGGGTTCGTGAAGCCAAGGACTCAACTATTAGCTTCTTTAATGATCACGTGGAGCAACCGCTTCTGTCCATTAGAGA
TGAACTTTTTGATACATTCAGGAAGAGGCACAAAGGTGTGATGGAGGTAGAAGAAGTGCAGTTGACTGCCAGTTCGCTGCATAGAATGTTATTGGCTTTC
AGCGAGCAGACAAAAGTTCAAAAGTTCCCTGAACATGCATCAGATCAGGAAATGCTTGAAATAGTTATGGACAGGTATGAACAGGAACTTACGCATCCTA
TTCAGAATCTCTTAAAGGGAGAGCTTGCTCATGCTTTGCTGATCCAGGTTCAGAAGCTAAAATTGGATATTGAGACGGCGATGCTTGAACTGGATCAGAT
TCTCAAGGCAAATGAGATCAATTTTGCTATTCTTGCAGCCTTACCGGCTTTCTTTCTCTCTCTTTTGCTGCTAATGTTATTGCGTGCATGGTTTAAACGG
GATACTAGAGCAGAAGGAAGGGGCAGAATTGCTCGGCGCCAAAGGAGACTGCTTTTAGTGGAGGTTGAGAAAGGAATTGCTCAATATCAAACTTACGTTA
ACCAAGGACTGGAAAAGGAGTCACAATGCATGTTTGGATTAGTGTTACATTGTCTGGATCGCCTGTTCCATGCTGTAGAGGGGCATGCAAAAGCCACTGG
TGAATGGCAATGGTTGAGACAGGATATTATTGATCTGGGGAAGCCCCGCCTTCAAACTGACTATAAGCTCATGGTGTTATCTCGCATGGAGCGGGTTTAC
GAGTGCCTGCTTCCTTCATTGAGACGACAATAG
AA sequence
>Potri.009G022200.1 pacid=42771448 polypeptide=Potri.009G022200.1.p locus=Potri.009G022200 ID=Potri.009G022200.1.v4.1 annot-version=v4.1
MDLEEHRRTNEEEDETEANKQKGFILSVYFHYLRNRLAALFPLSFHDSSDFLSRISNLCVQTGRRVFFPRRRRKACLPLPLPSNTLDSSVVRIESSRVYD
VLEDIMGHIFIHLHNIQDNLQFWQPLIEASNARKLYFMIFERGPNAFLGGTAKVLRQSIVDGWSMQHLSQFASAYISERIVILSNLRCAIATFLAEVYME
VDRRGEQLVEDPEKSFPPLLAVINHLFSNLEASIGHLHAIRQTDSSVEGSYSFPLVFEKSPKVNQEGSQWTDCEISDAINAVYKNLEKLDSYISVMVSKH
QKPSKLSQHWIRHTCGVVGLSFCSSWLLRHSRLMGSPDIDNWVREAKDSTISFFNDHVEQPLLSIRDELFDTFRKRHKGVMEVEEVQLTASSLHRMLLAF
SEQTKVQKFPEHASDQEMLEIVMDRYEQELTHPIQNLLKGELAHALLIQVQKLKLDIETAMLELDQILKANEINFAILAALPAFFLSLLLLMLLRAWFKR
DTRAEGRGRIARRQRRLLLVEVEKGIAQYQTYVNQGLEKESQCMFGLVLHCLDRLFHAVEGHAKATGEWQWLRQDIIDLGKPRLQTDYKLMVLSRMERVY
ECLLPSLRRQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G12290 DGS1 dgd1 suppressor 1 (.1) Potri.009G022200
[exp]
0 1
AT5G14170 CHC1 SWIB/MDM2 domain superfamily p... Potri.015G094500
[exp]
1.00 0.8349
AT1G77550 tubulin-tyrosine ligases;tubul... Potri.006G141900
[exp]
6.00 0.7996
AT1G09620 ATP binding;leucine-tRNA ligas... Potri.004G226700
[exp]
6.63 0.8260
AT1G25472 CPuORF54 conserved peptide upstream ope... Potri.010G125700
[exp]
6.92 0.8079
AT1G80680 NUP96, SAR3, MO... PRECOCIOUS, MODIFIER OF SNC1,3... Potri.003G180100
[exp]
6.92 0.7967 PRE.1
AT5G08415 Radical SAM superfamily protei... Potri.013G136000
[exp]
14.49 0.7319
AT1G29790 S-adenosyl-L-methionine-depend... Potri.011G079000
[exp]
15.49 0.7660
AT2G19520 ATMSI4, ACG1, N... MULTICOPY SUPPRESSOR OF IRA1 4... Potri.006G151800
[exp]
16.91 0.7606 NFC905,ATMSI4.4
AT4G28510 ATPHB1 prohibitin 1 (.1) Potri.017G017400
[exp]
18.33 0.7692 PHB1.2
AT3G54130 Josephin family protein (.1) Potri.006G095700
[exp]
19.44 0.7498

Potri.009G022200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.