Plant FIBer expression Database

Potri.009G022300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12490 133 / 7e-41 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
AT2G40880 120 / 1e-36 ATCYSA, FL3-27 cystatin A (.1)
AT5G12140 108 / 5e-32 ATCYS1 cystatin-1 (.1)
AT5G05110 98 / 2e-26 Cystatin/monellin family protein (.1)
AT5G47550 64 / 2e-14 Cystatin/monellin superfamily protein (.1)
AT4G16500 54 / 1e-10 Cystatin/monellin superfamily protein (.1)
AT2G31980 50 / 5e-09 AtCYS2 PHYTOCYSTATIN 2 (.1)
AT1G63190 45 / 1e-06 Cystatin/monellin superfamily protein (.1)
AT1G03710 40 / 9e-05 Cystatin/monellin superfamily protein (.1.2)
AT1G63200 39 / 0.0001 Cystatin/monellin superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G225800
[exp]
175 / 9e-59 AT3G12490 142 / 4e-44 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.003G192200
[exp]
130 / 3e-39 AT3G12490 303 / 6e-105 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.001G032900
[exp]
128 / 9e-39 AT3G12490 276 / 2e-95 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.006G033201
[exp]
124 / 2e-37 AT3G12490 251 / 8e-86 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.016G030900
[exp]
124 / 4e-37 AT3G12490 244 / 5e-82 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.006G014500
[exp]
54 / 8e-11 AT5G47550 100 / 9e-29 Cystatin/monellin superfamily protein (.1)
Potri.002G235800
[exp]
45 / 4e-07 AT2G31980 96 / 5e-26 PHYTOCYSTATIN 2 (.1)
Potri.014G149300
[exp]
42 / 1e-05 AT2G31980 90 / 1e-23 PHYTOCYSTATIN 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026779
[exp]
139 / 2e-44 AT3G12490 129 / 2e-39 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Lus10008702
[exp]
115 / 2e-33 AT3G12490 241 / 9e-81 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Lus10026117
[exp]
112 / 3e-32 AT3G12490 261 / 2e-88 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Lus10041257
[exp]
55 / 1e-10 AT2G31980 72 / 9e-17 PHYTOCYSTATIN 2 (.1)
Lus10017567
[exp]
39 / 0.0001 AT5G47550 69 / 7e-16 Cystatin/monellin superfamily protein (.1)
Lus10010495
[exp]
38 / 0.0002 AT5G47550 73 / 1e-17 Cystatin/monellin superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0121 Cystatin PF00031 Cystatin Cystatin domain
Representative CDS sequence
>Potri.009G022300.1 pacid=42771933 polypeptide=Potri.009G022300.1.p locus=Potri.009G022300 ID=Potri.009G022300.1.v4.1 annot-version=v4.1
ATGGCAACAGGTGGTATCAAAGAAGTGGGAGGATCAGCTAACAGTCTTGAAATCGAGAGTCTTGCTCGTTTTGCTGTTGATGATTACAACAAGAAACAGA
ATTCGCTGCTCGAGTTCAAGAGAGTGGTGAAAACAAAGCAGCAGGTGGTATCTGGGACGATGTACTACATAACCTTTGAGGTAACTGACGGGGGTCACAG
GAAAGTGTATGAAGCCAAGGTGTGGGAGAAGCCATGGATGAATTTTAAGGAGGTTCAGGAATTCAAGCTTGTCGGGGATGCTCCTTCTGACTCTAGCGCT
TAG
AA sequence
>Potri.009G022300.1 pacid=42771933 polypeptide=Potri.009G022300.1.p locus=Potri.009G022300 ID=Potri.009G022300.1.v4.1 annot-version=v4.1
MATGGIKEVGGSANSLEIESLARFAVDDYNKKQNSLLEFKRVVKTKQQVVSGTMYYITFEVTDGGHRKVYEAKVWEKPWMNFKEVQEFKLVGDAPSDSSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12490 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYST... Potri.009G022300
[exp]
0 1
AT3G12490 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYST... Potri.006G033201
[exp]
2.00 0.8880
AT4G19640 ATRAB-F2B, ARA7... ARABIDOPSIS RAB GTPASE HOMOLOG... Potri.003G054900
[exp]
4.89 0.8784
AT1G10155 ATPP2-A10 phloem protein 2-A10 (.1) Potri.012G120340
[exp]
7.07 0.8633
AT1G56420 unknown protein Potri.013G009100
[exp]
8.83 0.8444
AT5G48655 RING/U-box superfamily protein... Potri.003G148300
[exp]
11.09 0.8766
AT2G39210 Major facilitator superfamily ... Potri.008G032901
[exp]
13.74 0.8650
AT1G11330 S-locus lectin protein kinase ... Potri.004G027300
[exp]
14.28 0.8397
AT3G21790 UDP-Glycosyltransferase superf... Potri.016G016500
[exp]
14.49 0.8653
AT1G14870 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1... Potri.010G108900
[exp]
15.19 0.8604
AT1G75510 Transcription initiation facto... Potri.005G233800
[exp]
16.79 0.8664

Potri.009G022300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.