Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 1008 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G72520 823 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 816 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G67560 792 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 679 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 650 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G046200 [exp] 1176 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 1169 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 1168 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 1093 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.010G057100 [exp] 838 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 835 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.008G178000 [exp] 833 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G089500 [exp] 672 / 0 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G151500 [exp] 665 / 0 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002547 [exp] 1079 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 1077 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 1066 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 1044 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 1041 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 971 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10032087 [exp] 952 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031236 [exp] 835 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10013151 [exp] 832 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10015666 [exp] 830 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [poplar] [flax] Lipoxygenase Lipoxygenase CL0321 [poplar] [flax] PLAT PF01477 [poplar] [flax] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Potri.009G022400.1 pacid=42772707 polypeptide=Potri.009G022400.1.p locus=Potri.009G022400 ID=Potri.009G022400.1.v4.1 annot-version=v4.1 ATGATAAGCTCTCAGATTCAAAAGCTCAACTCCACCAAACCCTTGTCATCACTTTTACCAAAACCCTCAATCCTGAGCCATGGAAACCCCAGCCTTCCGA TTTATAAGCAGCAATATTTACCTAAAAGGCAAGCTAACTTTAGAATCCGTGCAGCTCTTGGCAATGCCAAGGTTTTATCAAAACCATCAACAACAGAAAC TGCTGTGAAAGTTAAGGCAACTGTTACGGTTAAAGTAACAATTGGTGGAATTTTCTCCAATATTGGTTTAACAGTACCTCTTGATGAGTTAACTGAGGTA TTTGGTAAATCTTTTCTTTTGGAGCTTGTTAGCTCACAGCTTGATCCCAATACTGGATTAGAGAAGGAAACAATCAAGGCTTATGCTCACAAAGCAAGCC AAAAAGATGATGAGGTGAAATATGAGACTAAATTCACGGTACCGGCAGGATTTGGAGCGGTTGGAGCAGTTTTGGTAGAGAACCAACATCACAAGGAAAT CTTTCTTAAGGACATAGTTCTTGAAGGATTCCCTAATGGCCCCGTCAATGTTGAATGTGATTCATGGGCTCATTCTAAATATGACGATTCTAAGAAGAGA ATTTTCTTTGCCAACAAGTCCTACATAACTACCGAGACCCCTGATGGACTGAAGAGGCTAAGGGAGCAAGAGTTGGAAGATATACGAGGAAATGGAGAAG GGGAGAGAAAGTCACATGAGAGGATCTATGACTACGATACATATAATGATCTTGGTTTTCCAGATATAAGCAGTAAACTAGCAAGGCCTGTGCTAGGCGG CAAAGAGCGCCCGTACCCAAGGCGTTGCAGAACCGGACGCCCGCGCACTAGAAAGGACCCATCGTCCGAATCAAAAAGCCTCATTAACTATGTGCCGAGG GATGAGGTATTCTCGGAGGTGAAACAAATCACATTCTCAGCAAAGACATTGAAGTCTGTGTTGAACGCGCTCCTGCCATCGATTGAGTCTGTTTTTGAAG ATCCAAAACTTGGATTCCCTTACTTCAATGCCATAGACTCTCTTTTCGACGAAGGAGTTACATTGCCTAAGCCGAAAAATACAGGGTTTCTCCGCACGGT TTTGCCAAGGCTTGTGAAAACTTTTAGAGAGGGAGGAGATGAATTGTTGCTCTTCGACACTCCTGACATGATTGATAGAGATAAATTTTCTTGGTTCAAG GATGAAGAATTCTCTCGGCAAACACTGGCTGGTCTAAATCCTTTCAGCATACAGTTAGTTACGGAATGGCCCCTAACAAGTAAGCTTGACCCTGAAATCT ATGGCCCTCCTGAATCAATGATCACAACAGAACTCTTGGAAAAAGAGATTGGAGGAATTATGACTGTTGAAGAGGCTAAGAAACAAAAGAGGATTTTTAT GTTGGATTATCATGATTTATACTTGCCTTATGTGAACAAAGTGAGAGAGCTTGAAGGAACTACTTTATATGGATCTCGGACGCTGTTCTTCCTCATGGAA AATGGCACCTTGAGGCCTCTGGCCATTGAACTCACCAGGCCACCATCCGGTGACAAGCCACAATGGAAACAAGTGTTTACACCCAGCTGTTCCGATGCCA CTGGTTGCTGGCTGTGGAGGCTGGCCAAAGCTCATGTTTGTGCTCATGACTCCGGTTACCACCAGCTCGTCATTCACTGGCTAAGGACACACTGCTGTGC AGAGCCGTACATAATTGCTGCTAATAGGCAACTAAGTGCAATGCATCCAATCAATAGACTTCTACGTCCGCATTTCCGATACACAATGGAAATCAACGCT CTTGCTCGAGAAAGCCTCATCAATGCAGCAGGAATAATTGAAACCACTTTCTCTCCTGGAAAATACTGCATGGAGCTCAGCTCAGTTGCTTATGACAAGC TATGGAGATTCGATACGGAAGCACTGCCAGCTGACCTCATTAGAAGGGGAATGGCAGTAGAGGATCCAACAGCAAGACATGGCCTGAAGCTGACAATCGA AGACTATCCATTCGCCAATGACGGTCTTGTTCTTTGGGATGCAATTAAGGAATGGGTTGGTGACTACGTGAAACACTACTACCCAGAAGCAAGCATGGTG GAGTCCGACAAAGAACTTCAAGCATGGTGGACAGAAGTGCGAGCTAAAGGCCACGAAGACAAGAAGGATGAACCATGGTGGCCTGTCCTGAAAACACAAG AAAACTTGGTTCATGTTTTAACTACAATAATTTGGGTGACTTCAGGTCATCATGCAGCTGTGAACTTTGGCCAGTACATGTATGGTGGGTACTTCCCCAA CAGGCCAACAATAGCTCGAACCAACATGCCAACTGAGTCACCATCAGATGAGGAGTGGAAGCTCTTCTTGAAGAAACCAGAACTTTCACTGTTAAAATGC TTCCCTACACAGCTTCAAGCAACAAAAGTGATGGCTGTTCTGAATGTTTTATCTAGCCATTCGCCTGATGAGGAGTATATCGGCGAGAAAACGGAACCAT CTTGGGAAGAAAATCCTGTCATTAAGGCTGCATTTGAAAAGTTCACTGGAAGACTGAAGGAGCTCGAAGGGATTATTGATGAAAGGAACACTGATTTGAA CCTGAAAAATAGGACTGGAGCTGGAGTTGTTCCATATGAGCTCCTGAAGCCATTTTCTGCTCATGGTGTCACAGGGAAGGGAGTTCCTAATAGCATCTCC ATTTAA
AA sequence Show only first row Show all	>Potri.009G022400.1 pacid=42772707 polypeptide=Potri.009G022400.1.p locus=Potri.009G022400 ID=Potri.009G022400.1.v4.1 annot-version=v4.1 MISSQIQKLNSTKPLSSLLPKPSILSHGNPSLPIYKQQYLPKRQANFRIRAALGNAKVLSKPSTTETAVKVKATVTVKVTIGGIFSNIGLTVPLDELTEV FGKSFLLELVSSQLDPNTGLEKETIKAYAHKASQKDDEVKYETKFTVPAGFGAVGAVLVENQHHKEIFLKDIVLEGFPNGPVNVECDSWAHSKYDDSKKR IFFANKSYITTETPDGLKRLREQELEDIRGNGEGERKSHERIYDYDTYNDLGFPDISSKLARPVLGGKERPYPRRCRTGRPRTRKDPSSESKSLINYVPR DEVFSEVKQITFSAKTLKSVLNALLPSIESVFEDPKLGFPYFNAIDSLFDEGVTLPKPKNTGFLRTVLPRLVKTFREGGDELLLFDTPDMIDRDKFSWFK DEEFSRQTLAGLNPFSIQLVTEWPLTSKLDPEIYGPPESMITTELLEKEIGGIMTVEEAKKQKRIFMLDYHDLYLPYVNKVRELEGTTLYGSRTLFFLME NGTLRPLAIELTRPPSGDKPQWKQVFTPSCSDATGCWLWRLAKAHVCAHDSGYHQLVIHWLRTHCCAEPYIIAANRQLSAMHPINRLLRPHFRYTMEINA LARESLINAAGIIETTFSPGKYCMELSSVAYDKLWRFDTEALPADLIRRGMAVEDPTARHGLKLTIEDYPFANDGLVLWDAIKEWVGDYVKHYYPEASMV ESDKELQAWWTEVRAKGHEDKKDEPWWPVLKTQENLVHVLTTIIWVTSGHHAAVNFGQYMYGGYFPNRPTIARTNMPTESPSDEEWKLFLKKPELSLLKC FPTQLQATKVMAVLNVLSSHSPDEEYIGEKTEPSWEENPVIKAAFEKFTGRLKELEGIIDERNTDLNLKNRTGAGVVPYELLKPFSAHGVTGKGVPNSIS I

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.009G022400 [exp]	0	1
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Potri.010G181000 [exp]	2.23	0.9716
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	2.44	0.9705
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.018G008900 [exp]	3.87	0.9673
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Potri.008G076400 [exp]	4.00	0.9625
AT3G24020			Disease resistance-responsive ...		Potri.001G054000 [exp]	5.47	0.9606
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G183400 [exp]	5.91	0.9252
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G312600 [exp]	7.93	0.9559
AT1G78780			pathogenesis-related family pr...		Potri.001G389800 [exp]	9.79	0.9344
AT2G39430			Disease resistance-responsive ...		Potri.008G049100 [exp]	9.89	0.9601
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Potri.007G030400 [exp]	10.00	0.9531

Compare expression of checked genes

Potri.009G022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.