Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 431 / 5e-150 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 402 / 5e-138 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT3G12140 296 / 9e-98 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G06780 260 / 6e-84 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT5G20030 50 / 9e-07 Plant Tudor-like RNA-binding protein (.1) AT1G80810 46 / 4e-05 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G47690 45 / 0.0001 binding (.1.2.3) AT3G57970 44 / 0.0001 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT4G31880 44 / 0.0002 unknown protein AT1G15940 43 / 0.0004 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G229000 [exp] 745 / 0 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G013800 [exp] 460 / 2e-160 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 442 / 2e-153 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 442 / 3e-153 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 371 / 1e-126 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.016G047600 [exp] 366 / 9e-125 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 52 / 3e-07 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.003G181300 [exp] 50 / 2e-06 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.001G046500 [exp] 49 / 4e-06 AT4G31880 267 / 1e-76 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031221 [exp] 389 / 2e-133 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 384 / 5e-131 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031223 [exp] 379 / 1e-128 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 358 / 5e-121 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10004188 [exp] 315 / 2e-104 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10021038 [exp] 284 / 3e-93 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10000040 [exp] 150 / 5e-44 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10014715 [exp] 50 / 1e-06 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10038777 [exp] 51 / 2e-06 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10039082 [exp] 51 / 2e-06 AT5G47690 1661 / 0.0 binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [poplar] [flax] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Potri.009G022900.1 pacid=42772111 polypeptide=Potri.009G022900.1.p locus=Potri.009G022900 ID=Potri.009G022900.1.v4.1 annot-version=v4.1 ATGGATTACGAGCCTTACGATAGCAGTGGAACTGATGATGATCTTCCCCCGTCACATCAAAACAGAATTCCCAGAGGGGGTCGTGTGGCAGGGAATGGAA GACCAGTTGGAGGTTCAGTCCCTTATCCTAGAATGTATGGTGAAACTGATATGGAGACTCAAATTCACCAACTTGAGCAAGAAGCATACAGTTCAGTTCT AAGAGCATTTAAAGCACAAGCTGATGCCATCACTTGGGAGAAGGAAAGCTTGATAACAGAGCTTAGAAAGGAGTTGAGATTGTCTAATGAGGAGCACCGA GAGCTTCTTGCTCGGGTTAATGCAGATGATGTAATACGGAGGATAAGGGAATGGAGACAGGCAGGTGGGCATCAATCTGGCATGCTCACTACAGGTCAAG CTGTTCATGATCCAATACCTAGCCCTACTGTCTCTGCATCTCGCAAGAAACAGAAGATGACATCGTCAATACCTTCTCAGTCCTTTGTTGGGCCTTCTCC ATCATTTCACCCACCAGCAGTGTCTGCATCGCACCAGCCATCTTCATCTGCTGCTAAACGTGGACCGGGAACAGGACCCAAGGGCAAGAAGCAAAAACCT GGTTTACCTGGTGCTTCTTCAATGAAGTCCATTCCATACCCATCATCAGGTCCATCTGGAAGAGGGCAAGTTGCAAGTAGAATATCTTCCGGTGCTGTTC CTGAAGGTGCTGATCAATATATTGGGAAGAGAGTCAAAACTAGGTGGCCTGATGATAATCACTTTTATGAGGCTGTTATAACTGACTACAATCCAATTGA GGGGCGGCATGCTCTGGTATATGATATGGGAACAGCAAATGAGACATGGGAATGGGTTAATCTGTCAGAGATCTCTCCTGGTGATATACAATGGGTAGAT GAGGACCCTGGAATTTCTCATCGTGGCAATTATGGTGGTTCAGGGCATGGGATAAATAGGGCAATGGGTCGGGATGGTGGTCCTGGTCCTGGAAGAAGTA GAGGGGTAACAAAAGGTCAATCCAGGAAAGATTTGTTGCCTTCACAGAATGGGATTGGAAAAAAGGTGCCTGATGATATCCAAATTCTTCATACAGATAC TCTAATCAGAGAAGTAGAGAGAGTCTTCAGTGCAAATCATCCTGATCCTCTTGAGATTGACAAAGCAAAGAAAGTATTGAAGGATCATGAGCAAGCACTT GTTGATGCAATTTCAAGGCTTGCAGATATTTCTGATGGTGAAAGTGATGAGGGTGGTCGCCGTTATGGGCAGGCATTGGAGAGAGGATGA
AA sequence Show only first row Show all	>Potri.009G022900.1 pacid=42772111 polypeptide=Potri.009G022900.1.p locus=Potri.009G022900 ID=Potri.009G022900.1.v4.1 annot-version=v4.1 MDYEPYDSSGTDDDLPPSHQNRIPRGGRVAGNGRPVGGSVPYPRMYGETDMETQIHQLEQEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHR ELLARVNADDVIRRIREWRQAGGHQSGMLTTGQAVHDPIPSPTVSASRKKQKMTSSIPSQSFVGPSPSFHPPAVSASHQPSSSAAKRGPGTGPKGKKQKP GLPGASSMKSIPYPSSGPSGRGQVASRISSGAVPEGADQYIGKRVKTRWPDDNHFYEAVITDYNPIEGRHALVYDMGTANETWEWVNLSEISPGDIQWVD EDPGISHRGNYGGSGHGINRAMGRDGGPGPGRSRGVTKGQSRKDLLPSQNGIGKKVPDDIQILHTDTLIREVERVFSANHPDPLEIDKAKKVLKDHEQAL VDAISRLADISDGESDEGGRRYGQALERG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	0	1
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.005G071900 [exp]	1.41	0.8947
AT3G55560	AT-hook	AHL15, AGF2	AT-hook motif nuclear-localize...		Potri.008G058700 [exp]	2.82	0.8751
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	3.46	0.8629	ARR12.2
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.018G150700 [exp]	4.00	0.8684
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.016G025300 [exp]	4.00	0.8605
AT4G03420			Protein of unknown function (D...		Potri.019G103000 [exp]	4.24	0.8391
AT5G58720			smr (Small MutS Related) domai...		Potri.009G046300 [exp]	5.74	0.8466
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	7.41	0.8651	ENOD8.2
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	7.93	0.8701	Pt-FHY3.2
AT2G34730			myosin heavy chain-related (.1...		Potri.001G466800 [exp]	8.30	0.8341

Compare expression of checked genes

Potri.009G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.