Plant FIBer expression Database

Potri.009G023001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G229100
[exp]
62 / 3e-12 AT5G67030 477 / 9e-164 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G023001.1 pacid=42771479 polypeptide=Potri.009G023001.1.p locus=Potri.009G023001 ID=Potri.009G023001.1.v4.1 annot-version=v4.1
ATGGGAACAGAATTATGCAGAGAAATGGAGCTTTGGATTCTGATTGTTATGGCTTCATTATGCATAGGTACGAGAAGAAAAGAATGTTCCGAGTTAGTGA
TGGTGCCTGCAGCCGCCAGGATGGCATTAAAAGCACTCACCTTCTACCCACCATACATGAAATTTAGATCTGGCCCATTGTCTTATCTATCAACTCTAGA
AATAAGCAGACTGTTCATGTGGGACGTGCTTTTCAGCAAATTTTCTTTCCAACAGTTCCTGATTTGGATGATGGCTGGCCGTGGGTTTGGAGAGAGGAAC
AGAATAATTCGAACTGACGGTACATTCAGGGACATTGCCTACGTTTTTGAAAATTAG
AA sequence
>Potri.009G023001.1 pacid=42771479 polypeptide=Potri.009G023001.1.p locus=Potri.009G023001 ID=Potri.009G023001.1.v4.1 annot-version=v4.1
MGTELCREMELWILIVMASLCIGTRRKECSELVMVPAAARMALKALTFYPPYMKFRSGPLSYLSTLEISRLFMWDVLFSKFSFQQFLIWMMAGRGFGERN
RIIRTDGTFRDIAYVFEN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G023001
[exp]
0 1
Potri.008G068601
[exp]
18.43 0.7390
AT1G70260 nodulin MtN21 /EamA-like trans... Potri.010G096100
[exp]
33.85 0.7711 N21L6
AT5G01750 Protein of unknown function (D... Potri.016G130500
[exp]
38.47 0.7085
Potri.009G013701
[exp]
39.19 0.7108
AT3G63470 SCPL40 serine carboxypeptidase-like 4... Potri.009G056000
[exp]
51.16 0.6826
AT5G65090 DER4, MRH3, BST... DEFORMED ROOT HAIRS 4, BRISTLE... Potri.007G090200
[exp]
54.20 0.6379
AT1G62640 KAS III, KASIII 3-ketoacyl-acyl carrier protei... Potri.003G112101
[exp]
116.54 0.6252
AT3G14470 NB-ARC domain-containing disea... Potri.017G144481
[exp]
129.75 0.6460
Potri.013G012733
[exp]
140.19 0.6666
AT5G21940 unknown protein Potri.006G219800
[exp]
150.51 0.6442

Potri.009G023001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.