Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06170 125 / 1e-33 bHLH bHLH149 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31220 116 / 3e-30 bHLH bHLH010 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31210 87 / 9e-20 bHLH bHLH091 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31215 51 / 4e-08 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46760 43 / 0.0001 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202100 [exp] 154 / 3e-44 AT2G31220 252 / 8e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G068500 [exp] 150 / 1e-42 AT2G31220 253 / 7e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 42 / 0.0002 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G105200 [exp] 41 / 0.0004 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.009G136300 [exp] 40 / 0.0007 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020478 [exp] 146 / 8e-42 AT2G31220 271 / 3e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007101 [exp] 145 / 4e-41 AT2G31220 268 / 8e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 46 / 2e-05 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10032542 [exp] 44 / 6e-05 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10043199 [exp] 44 / 6e-05 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10000037 [exp] 42 / 0.0001 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10012457 [exp] 41 / 0.0005 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G023800.1 pacid=42771960 polypeptide=Potri.009G023800.1.p locus=Potri.009G023800 ID=Potri.009G023800.1.v4.1 annot-version=v4.1 ATGATTAAGCAGCTGCGACAACAGATCAAGCCCTCCATGGAAGAACTACCTGGTCTCGAACTTGGAATGACATCATGTACTGATATGATACAAGAGCAGC AAAGCACTACTTCTCTCATCGCCTTTGCTATTGAGCTCCAAAGAAGAGGGCAGTTGAATGATAACTACAAAACCTTGAGGGATTTGATTAAAAATCCTTC CACCAAGGAGGACAGAGCAACTGTGATTAGAGATGCTATTAAGTATATCATACAACTTATCCGAACAGTTTATGAACTCAAACAACTAGTGGAGAAAACG AGAGGTAAGAAATTAGATACCATAGGAGGGGTAGACGTTTTTACGAAGCCTGTTGTTCGTAAATCACAATATAGCCATTCCTACAATGATGTTAGTAGTG GACCATCATTTTCGAAGAAGCATAGCTCGGTTCAGAGGAAATCTAAGGATACAGAGATAGATGTGCGCATTATTGGTGATGAAGTTACCATCAAAGTCCT TCGCCGAAGGAAGAAGAACGATTATTGCTTGCTGTTTGTGTCCAGGGTTCTTGATGAGCTTCATATGGATCTCCATTTTGTTTCCAGTTGCTATATTGGC TACGAAACCTATTATTTTCAGTTTAAAACCAAGATTAATGGAGGACCTTCGAGTGATAATGCGCATACCATAGCCGACAAGTTGATTGAGGTTCTGGACA GCAGTTGTTCTATATAG
AA sequence Show only first row Show all	>Potri.009G023800.1 pacid=42771960 polypeptide=Potri.009G023800.1.p locus=Potri.009G023800 ID=Potri.009G023800.1.v4.1 annot-version=v4.1 MIKQLRQQIKPSMEELPGLELGMTSCTDMIQEQQSTTSLIAFAIELQRRGQLNDNYKTLRDLIKNPSTKEDRATVIRDAIKYIIQLIRTVYELKQLVEKT RGKKLDTIGGVDVFTKPVVRKSQYSHSYNDVSSGPSFSKKHSSVQRKSKDTEIDVRIIGDEVTIKVLRRRKKNDYCLLFVSRVLDELHMDLHFVSSCYIG YETYYFQFKTKINGGPSSDNAHTIADKLIEVLDSSCSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06170	bHLH	bHLH149	basic helix-loop-helix (bHLH) ...		Potri.009G023800 [exp]	0	1
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.017G036100 [exp]	1.00	0.9098
AT5G54850			unknown protein		Potri.001G421000 [exp]	4.24	0.8735
AT2G26470			unknown protein		Potri.002G250400 [exp]	8.36	0.8762
AT5G36930			Disease resistance protein (TI...		Potri.006G269950 [exp]	11.57	0.8898
AT4G30130			Protein of unknown function (D...		Potri.018G147749 [exp]	18.33	0.8828
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	18.65	0.8182
AT4G27290			S-locus lectin protein kinase ...		Potri.010G017900 [exp]	18.76	0.8723
					Potri.001G247000 [exp]	19.89	0.8656
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G017000 [exp]	19.89	0.8313
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.012G114100 [exp]	28.28	0.8750

Compare expression of checked genes

Potri.009G023800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.