Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31350 330 / 1e-110 KUF1 KAR-UP F-box 1 (.1) AT2G24540 73 / 4e-14 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 62 / 3e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 48 / 9e-06 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 45 / 7e-05 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G21950 42 / 0.0005 SKIP6 SKP1 interacting partner 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G230600 [exp] 575 / 0 AT1G31350 352 / 2e-119 KAR-UP F-box 1 (.1) Potri.019G044000 [exp] 359 / 2e-122 AT1G31350 277 / 3e-90 KAR-UP F-box 1 (.1) Potri.018G007100 [exp] 81 / 8e-17 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G004500 [exp] 50 / 1e-06 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 48 / 7e-06 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G000700 [exp] 48 / 8e-06 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 48 / 8e-06 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G217700 [exp] 48 / 1e-05 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 47 / 1e-05 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033288 [exp] 355 / 3e-120 AT1G31350 362 / 3e-123 KAR-UP F-box 1 (.1) Lus10034748 [exp] 160 / 7e-48 AT1G31350 169 / 2e-51 KAR-UP F-box 1 (.1) Lus10017821 [exp] 51 / 1e-06 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10002112 [exp] 50 / 1e-06 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 50 / 3e-06 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 48 / 1e-05 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 44 / 0.0002 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 43 / 0.0004 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10016214 [exp] 42 / 0.0006 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037196 [exp] 42 / 0.0007 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G024000.1 pacid=42772794 polypeptide=Potri.009G024000.1.p locus=Potri.009G024000 ID=Potri.009G024000.1.v4.1 annot-version=v4.1 ATGGCCAATTCCATCCAAACTTCCATCACTGACACTACCACCGAAAACCCCACCAAACGTCGACAGCTAATTACAGACGGCCACCGCCACCTAGAACAGC CTCTCATACCAGGTCTCCCTAACGACATAGCCCAGCTTTGTCTCTCCCTTGTTCACCCTTCCACTCTTTACTCTGTTTGCCACTCATGGCGTCGCCTAAT CTATTCCCCTTCTTTCCCTCCTTTCTTCTCTTTGTATGCAGTGCTATCATCAACGAATACAAACCATAACCTTCCTGATAATAACTCAATCCAATTCTTT AACTTTGACCCCATTTCTTCCCGGTGGGATTCTCTCCCTCCTCCACCACCAGATCCACCACTCCATCTCATCCTTCGCCACCCTTCCTTTATCTCCCGTG ACCTTCCTATACAATCCATCTCCGCCTCTTATCGCTTGATACTTCTTGCTGCTACTTCTCACAGTTTTTCCCCAGCTCTCTCTCGCCCTCTTGTTTTTAA TCCACTTTCAGGCTCATGGGCCTTTGGTCCTCCCCTCGCCACACCTCGCCGCTGGTGTGCTGCTGGCTCGGCACATGGCACGGTCTATGTGGCGAGTGGG ATCGGATCCCAATACAACACAGACGTGGCCAAGTCATTGGAGAAGTGGGATTTGCAAAACCAGAAAGCCATGATCTCCAACATCCGCAATAAAACAACCA CATGGAAATGGGTAAAGGTTAAAGAACTAAAAAACGGGAGATTTAGTAGGGATGCTATTGATGCAGTAGGGTGGAGAGGGAAACTTTGTATGGTGAATAT GAAAGGAGATGCAGCTAAAGAAGGGATTGTTTATGACACTGAGAAGGACACATGGGAGGACATGCCACAGGGTATGGTTGCAGGGTGGAGAGGACCCGTG GCAGCCATGGACGAGGAGGTTATGTATGTGGTGGATGAAGCCAAAGGCGTGCTTAGAAAATATGATCCAGAAAGGGATTGCTGGGAGCGTATAATGGAGT CAGAGAGGCTTATTGGAGCACAGCAGATTGCTGCTGGTGGCGGTAGAGTTTGTGTTATTTGCGGCGGTAGTACTGAGCTTGTGGTGCTAGATGTGGTGGC GCTTCCGGTGAGACTATGGGTGGTGGAAACGCCACCGGGATTCGAAGCCTTTCGAATTCATATATTGCCAAGGATAAGCCGCCCAGATAATTGA
AA sequence Show only first row Show all	>Potri.009G024000.1 pacid=42772794 polypeptide=Potri.009G024000.1.p locus=Potri.009G024000 ID=Potri.009G024000.1.v4.1 annot-version=v4.1 MANSIQTSITDTTTENPTKRRQLITDGHRHLEQPLIPGLPNDIAQLCLSLVHPSTLYSVCHSWRRLIYSPSFPPFFSLYAVLSSTNTNHNLPDNNSIQFF NFDPISSRWDSLPPPPPDPPLHLILRHPSFISRDLPIQSISASYRLILLAATSHSFSPALSRPLVFNPLSGSWAFGPPLATPRRWCAAGSAHGTVYVASG IGSQYNTDVAKSLEKWDLQNQKAMISNIRNKTTTWKWVKVKELKNGRFSRDAIDAVGWRGKLCMVNMKGDAAKEGIVYDTEKDTWEDMPQGMVAGWRGPV AAMDEEVMYVVDEAKGVLRKYDPERDCWERIMESERLIGAQQIAAGGGRVCVICGGSTELVVLDVVALPVRLWVVETPPGFEAFRIHILPRISRPDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.009G024000 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Potri.017G132800 [exp]	7.34	0.9234
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.011G083100 [exp]	7.74	0.9365	PLCYC4.2
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.017G146800 [exp]	10.95	0.9123
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	12.40	0.9286
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Potri.009G066000 [exp]	14.56	0.9211
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	20.12	0.9191
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067400 [exp]	20.97	0.9158
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	21.21	0.9084
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099100 [exp]	21.90	0.9180
AT3G17970		ATTOC64-III	translocon at the outer membra...		Potri.012G046900 [exp]	22.49	0.8938	TOC64.1

Compare expression of checked genes

Potri.009G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.