Plant FIBer expression Database

CNX2.1 (Potri.009G024100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CNX2.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31955 610 / 0 CNX2 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G230604
[exp]
593 / 0 AT2G31955 458 / 3e-161 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008908
[exp]
631 / 0 AT2G31955 605 / 0.0 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
Lus10006989
[exp]
628 / 0 AT2G31955 603 / 0.0 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
CL0036 PF06463 Mob_synth_C Molybdenum Cofactor Synthesis C
CL0344 4Fe-4S PF13353 Fer4_12 4Fe-4S single cluster domain
Representative CDS sequence
>Potri.009G024100.9 pacid=42771685 polypeptide=Potri.009G024100.9.p locus=Potri.009G024100 ID=Potri.009G024100.9.v4.1 annot-version=v4.1
ATGATGAGGCGCTATACTTCAAAGTTTATTAATTGGCACTTGGGTTTGAGGAATCTCAGTTTCTCCATGGTTGGCTGTGAGGCTGAATCCTATTATGCAT
CCAGAAACAGCAAATGCCAAGGTTTTTTTAGCGGCCATCTTAATGGCTCCATGCCAAAGGCATATGCAACTTACTGTGCTAAGTTGCCAGAAGATCCACA
GAGCACTAATCTCGCTTCTGACATGTTAATTGATTCATTTGGGAGGATGCACACTTACTTGAGGATCTCCTTGACAGAACGTTGCAATCTACGTTGTCAG
TACTGTATGCCAGCTGAGGGTGTGGAGCTCACTCGTAGTCCTCAATTGCTCTCGCAGGATGAGATTGTTCATTTGGCAAATCTCTTTGTGAGCTCTGGAG
TAGATAAAATTCGTTTGACTGGTGGCGAGCCAACCATTAGAAAAGATATTGAAGACATATGCTTACAGCTGTCTAACTTGAAAGGACTAAAGACCTTGGC
CATGACAACCAATGGAATCACTCTTGCGAGAAAACTTCCAAAGCTGAAAGAATGTGGACTTACTTCTCTAAATATCAGCTTAGACACATTAGTCCCGGCA
AAATTTGAATTTTTGACTAGGCGGAAAGGGCATGAAAGAGTTATGGATTCAATTAATGCTGCTATTGACTGTGGGTACAATCCAGTAAAAGTGAATTGTG
TGGTGATGCGCGGGTTTAATGATGATGAGATTTGTGATTTTGTGGAGTTGACACATAACAAACCAATTAATGTTCGGTTCATTGAGTTCATGCCTTTTGA
TGGAAATGTTTGGAATGTCAAGAAACTAGTTCCTTACTCGGAAATGCTGGATAGAGTGGGAAAACAGTTTCCTAGCCTAAAGAGGCTGCAGGATCACCCT
GCTGATACGGCCAAGAACTTCAGGATAGATGGGCATCTTGGTATGGTTTCTTTTATCACCTCAATGACTGAGCATTTCTGTGCTGGTTGCAATAGATTGC
GACTTTTAGCTGATGGAAACTTTAAAGTATGCCTCTTTGGTCCTTCAGAGGTTAGCCTAAGAGATCCCCTTCGCGAAGGTGCTGAAGAACACGAGCTGAG
GGAAATAATTGGGGCGGCGGTCAAGAGGAAAAAAGCTTCACATGCTGGAATGTTTGACATTGCAAAAACAGCGAATAGACCAATGATACATATAGGAGGC
TAA
AA sequence
>Potri.009G024100.9 pacid=42771685 polypeptide=Potri.009G024100.9.p locus=Potri.009G024100 ID=Potri.009G024100.9.v4.1 annot-version=v4.1
MMRRYTSKFINWHLGLRNLSFSMVGCEAESYYASRNSKCQGFFSGHLNGSMPKAYATYCAKLPEDPQSTNLASDMLIDSFGRMHTYLRISLTERCNLRCQ
YCMPAEGVELTRSPQLLSQDEIVHLANLFVSSGVDKIRLTGGEPTIRKDIEDICLQLSNLKGLKTLAMTTNGITLARKLPKLKECGLTSLNISLDTLVPA
KFEFLTRRKGHERVMDSINAAIDCGYNPVKVNCVVMRGFNDDEICDFVELTHNKPINVRFIEFMPFDGNVWNVKKLVPYSEMLDRVGKQFPSLKRLQDHP
ADTAKNFRIDGHLGMVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLREGAEEHELREIIGAAVKRKKASHAGMFDIAKTANRPMIHIGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G31955 CNX2 cofactor of nitrate reductase ... Potri.009G024100
[exp]
0 1 CNX2.1
AT3G16350 MYB Homeodomain-like superfamily p... Potri.001G189800
[exp]
1.73 0.8734
AT1G01140 PKS6, CIPK9, Sn... SNF1-RELATED PROTEIN KINASE 3.... Potri.014G104200
[exp]
3.16 0.8716 CIPK9.2
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Potri.014G060500
[exp]
6.32 0.8605
AT5G06340 ATNUDX27 nudix hydrolase homolog 27 (.1... Potri.006G203700
[exp]
7.74 0.8719
AT5G49760 Leucine-rich repeat protein ki... Potri.004G231850
[exp]
11.95 0.8544
AT1G76390 PUB43 plant U-box 43, ARM repeat sup... Potri.014G102000
[exp]
13.11 0.8310
AT1G15000 SCPL50 serine carboxypeptidase-like 5... Potri.008G129800
[exp]
13.85 0.8086
AT1G18390 Protein kinase superfamily pro... Potri.010G120800
[exp]
15.87 0.8463
AT5G10330 ATHPA1, HPA1, H... HISTIDINE BIOSYNTHESIS 6A, EMB... Potri.013G113900
[exp]
20.12 0.8002
AT3G06880 Transducin/WD40 repeat-like su... Potri.012G118600
[exp]
25.69 0.8446

Potri.009G024100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.