Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31940 96 / 1e-26 unknown protein AT5G19875 76 / 2e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G231300 [exp] 148 / 6e-47 AT5G19875 69 / 8e-16 unknown protein Potri.003G216100 [exp] 66 / 7e-15 AT5G19875 86 / 1e-22 unknown protein Potri.001G009200 [exp] 66 / 1e-14 AT5G19875 72 / 5e-17 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024507 [exp] 84 / 3e-21 AT5G19875 104 / 8e-30 unknown protein Lus10008006 [exp] 70 / 4e-16 AT5G19875 90 / 7e-24 unknown protein Lus10006311 [exp] 69 / 9e-16 AT5G19875 83 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G024500.1 pacid=42772185 polypeptide=Potri.009G024500.1.p locus=Potri.009G024500 ID=Potri.009G024500.1.v4.1 annot-version=v4.1 ATGGGCAATAGTTACTCATATTCATCATCATCATCATCATCATCTTACAGCTCTCAGCCTCCATTACCAGTACACCTCTGCTTCTTCCTGCTTATACTGC TAATGTTCGTTGGTCTATCATGGTACATCAACTACGAGCCAGTGCTAGAGAGCATGCTCGATCAAGTGAAGCTGTTCCTCTCGGCGTCTCCCTTGCTGCT TTTGCTGCTTGTTCATTTGCTTTCCAATGATGATCATCGATATGGCAGGAAGCTTTCCCATTACATTCCTTTGCCGGAGAAGGACTCTCTTCATAGGGCT GGAGGAACTCCTTGGGGTGTTGGGTTTCTGCTTGTTTTTCTCTTTTTCTTGATCTCTTACCACTCCTATTTCCAAGAACGTTGGTTTCCTCTCTTGAGCA GGTAA
AA sequence Show only first row Show all	>Potri.009G024500.1 pacid=42772185 polypeptide=Potri.009G024500.1.p locus=Potri.009G024500 ID=Potri.009G024500.1.v4.1 annot-version=v4.1 MGNSYSYSSSSSSSSYSSQPPLPVHLCFFLLILLMFVGLSWYINYEPVLESMLDQVKLFLSASPLLLLLLVHLLSNDDHRYGRKLSHYIPLPEKDSLHRA GGTPWGVGFLLVFLFFLISYHSYFQERWFPLLSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31940			unknown protein		Potri.009G024500 [exp]	0	1
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.011G109900 [exp]	1.00	0.8445
AT3G24060			Plant self-incompatibility pro...		Potri.001G053200 [exp]	3.16	0.8277
AT5G62850		ATVEX1, SWEET5,...	VEGETATIVE CELL EXPRESSED1, No...		Potri.015G074300 [exp]	4.89	0.7907
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.005G040400 [exp]	5.65	0.8163	Pt-HPT2.3
AT2G44930			Plant protein of unknown funct...		Potri.017G019700 [exp]	5.91	0.8143
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G106800 [exp]	6.78	0.7305
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.015G072400 [exp]	9.79	0.7443
					Potri.009G063200 [exp]	14.96	0.7021
AT3G46540			ENTH/VHS family protein (.1)		Potri.009G030500 [exp]	19.44	0.7227
AT4G21570			Protein of unknown function (D...		Potri.001G405700 [exp]	21.42	0.7389

Compare expression of checked genes

Potri.009G024500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.