Plant FIBer expression Database

Potri.009G024600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44280 653 / 0 Major facilitator superfamily protein (.1.2.3)
AT3G60070 648 / 0 Major facilitator superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G232100
[exp]
804 / 0 AT3G60070 648 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034394
[exp]
610 / 0 AT3G60070 592 / 0.0 Major facilitator superfamily protein (.1)
Lus10019162
[exp]
444 / 1e-154 AT2G44280 399 / 7e-137 Major facilitator superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF13347 MFS_2 MFS/sugar transport protein
Representative CDS sequence
>Potri.009G024600.5 pacid=42772636 polypeptide=Potri.009G024600.5.p locus=Potri.009G024600 ID=Potri.009G024600.5.v4.1 annot-version=v4.1
ATGGTTAATGATGTTGAAGATGATGATTCATGCCCAAAGCCTGTTGGAAGAAGCTCTGTTTTCTATTATGGTGTCGGTCATATGCTAAACGACATCACGG
CCGCCTGTTGGTTTACTTATCTTTTATTGTTCTTGACAGAAATTGGACTGTCCCCTAGGGATGCTGCTATAGTTATGCTAGCAGGTCAGATAGCTGATGG
ATTTGCTACTGTATTTGCTGGAGAACTGATTGACAGGTTTGGACATTTCAAAATATGGCATGGTGCAGGATCTATCTTGGCTGCCATTTCATTTTCTTCA
GTTTTTGGTGGTTGCTTGCCATGCAAAATCTTGGCTTCCTCGTCACCAATAATAGAAACTATTTCATACAGCACGTCTGCTGCAATCTTCAATGTGGGTT
GGGCTGCCACCCAAGTGTCACACATGTCCATGGTGAATTGCATCTCACTGAATTCAACAAGCAGGGTGGTGATGACAAGCTGTCGGAATGCTTTTACCAT
GGTTGCGAACCTCAGTCTTTATGCTGTTGCATTAGTAGTATTCAGTACCACTAAAGCAACAACACATTCTGATATTGAAAATCAGTACCATTGGATTGCA
TACACTTCAATTTTTATAGGATGCTGCTTTGTGGGAATATTTCATCTTGGGACTAAAGAGCCAAGATTAAAGATACGTGTACATGGAACTAGTTATGCAA
GGATATCATGGGCTTACTGGTTCAAGAAAGTTTTATACTATCAAGTTGGTCTTGTCTATATGCTTACCAGACTTGCACAAAATGTTTCACAGGCATATCT
TGCATTCTATGTTATTGAGGATATGCGGATGGCAAAATCAGCTAAAGCTTTGGTTCCTGCAATCATCTATATCAGCAGCTTCATTGTATCTATCATTATG
CAGGAAATGTATTGGACTGGACAACGCCTGAAAGCCTACTATTGTGCTGGTGGAGTTCTCTGGGTATTCTGTGGCGCAAGCATCCTCTTTTTGCCTCGAA
GCTTGAGTGCTTTCATGTATGTCATATCAGTATTTATTGGCGTAGCGAATACTCTAATGACGATAACAGGAGTAAGCATGCAAAGTGTTCTAGTTGGTTC
AGATCTAGATGGCTGTGCATTTGTTTATGGATCTTTGAGTTTCCTAGACAAGGTTTCGTGTGGACTTGCTGTCTTTGTGCTTCAGTCTTTTCAAAGCTCC
TCACCGAGATCACAAGAAACCCTTTCTACAGAATATATTTCTGTCACAAGATATGGCTTGGGTCTGCTTCCAGCTGTTTGTTCACTTACTGGGATGGCTA
TTACATACACTATGAAACTCCAGACACCTCATTCAAAATCCTTGATGGAACCGTTGTTGGAATGA
AA sequence
>Potri.009G024600.5 pacid=42772636 polypeptide=Potri.009G024600.5.p locus=Potri.009G024600 ID=Potri.009G024600.5.v4.1 annot-version=v4.1
MVNDVEDDDSCPKPVGRSSVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAIVMLAGQIADGFATVFAGELIDRFGHFKIWHGAGSILAAISFSS
VFGGCLPCKILASSSPIIETISYSTSAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMTSCRNAFTMVANLSLYAVALVVFSTTKATTHSDIENQYHWIA
YTSIFIGCCFVGIFHLGTKEPRLKIRVHGTSYARISWAYWFKKVLYYQVGLVYMLTRLAQNVSQAYLAFYVIEDMRMAKSAKALVPAIIYISSFIVSIIM
QEMYWTGQRLKAYYCAGGVLWVFCGASILFLPRSLSAFMYVISVFIGVANTLMTITGVSMQSVLVGSDLDGCAFVYGSLSFLDKVSCGLAVFVLQSFQSS
SPRSQETLSTEYISVTRYGLGLLPAVCSLTGMAITYTMKLQTPHSKSLMEPLLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44280 Major facilitator superfamily ... Potri.009G024600
[exp]
0 1
AT5G44090 Calcium-binding EF-hand family... Potri.002G035800
[exp]
3.00 0.8588
AT3G56680 Single-stranded nucleic acid b... Potri.010G237500
[exp]
8.12 0.8535
AT2G42450 alpha/beta-Hydrolases superfam... Potri.005G222000
[exp]
10.19 0.8306
AT5G43500 ATARP9 actin-related protein 9 (.1.2) Potri.008G165000
[exp]
10.90 0.8094
AT2G25760 Protein kinase family protein ... Potri.006G236600
[exp]
11.53 0.8070
AT4G25880 APUM6 pumilio 6 (.1.2.3) Potri.003G009900
[exp]
12.96 0.8443
AT5G46410 SSP4 SCP1-like small phosphatase 4 ... Potri.011G078300
[exp]
15.49 0.8424
AT2G37650 GRAS SCL9 GRAS family transcription fact... Potri.006G086600
[exp]
16.12 0.8160
AT5G13660 unknown protein Potri.006G082800
[exp]
16.97 0.8374
AT1G04590 EMB2748 unknown protein Potri.016G103000
[exp]
18.00 0.8256

Potri.009G024600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.