Plant FIBer expression Database

Potri.009G024700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31930 58 / 7e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G232200
[exp]
201 / 4e-66 AT2G31930 72 / 2e-16 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G024700.1 pacid=42771782 polypeptide=Potri.009G024700.1.p locus=Potri.009G024700 ID=Potri.009G024700.1.v4.1 annot-version=v4.1
ATGGGAAGTGATCGAGGAAATAATATTCCTAGTAAACCCCGCTATGATATTACCATGTCCAGGAGAACAAGAAAGCCGTTGATGAATCTCAAAGAAACCA
ACCAAAATCCCACAACAGGCGCGCCACGAGAAGGAAATGCTGCTGGAGATGTTGGTCATGATCGAGGAGCAGATAGCGTTCTCACAAAAGAATGCGGTCA
TGAAGAAGTAGAGAGTCGTAAGAGCAGCTTGAAGCAACTTATAATGAAGAACGCAGGCAACGAAGAAAGTGAAGTAAGCAGGCTGCTGGTGGGGGAAACA
AGGGTCGGATCAGATAATGAAAATATTGAGAGCAAATTATTACTAGGAGGCAAGAATTCCCTTGGCCAGCATTTCAAGGGAGAAGAAAAGCAGCAGCTTC
AAATAGTAGTAACAAGGAAACAAGTAAAGGAAGGAATGGAAGGATTGAAGCTGAAAGGAATGGTGGGTCGTTATGTCAAGATGGTGAGCCATTTGATCAG
GGTCAAGCGTGACACACACATTCATAATGGATCCCGGAAAAAGCCACTTCTCCGGTTGCCCATGTAG
AA sequence
>Potri.009G024700.1 pacid=42771782 polypeptide=Potri.009G024700.1.p locus=Potri.009G024700 ID=Potri.009G024700.1.v4.1 annot-version=v4.1
MGSDRGNNIPSKPRYDITMSRRTRKPLMNLKETNQNPTTGAPREGNAAGDVGHDRGADSVLTKECGHEEVESRKSSLKQLIMKNAGNEESEVSRLLVGET
RVGSDNENIESKLLLGGKNSLGQHFKGEEKQQLQIVVTRKQVKEGMEGLKLKGMVGRYVKMVSHLIRVKRDTHIHNGSRKKPLLRLPM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G31930 unknown protein Potri.009G024700
[exp]
0 1
AT1G27850 unknown protein Potri.010G056200
[exp]
2.00 0.9441
AT1G28240 Protein of unknown function (D... Potri.004G044100
[exp]
2.23 0.9571
AT5G01360 TBL3 TRICHOME BIREFRINGENCE-LIKE 3,... Potri.016G119100
[exp]
3.46 0.9388
AT1G02180 ferredoxin-related (.1) Potri.006G220700
[exp]
4.47 0.9386
AT4G22120 ERD (early-responsive to dehyd... Potri.004G006100
[exp]
6.92 0.9240
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.018G119500
[exp]
7.48 0.9273
AT3G26890 unknown protein Potri.001G324700
[exp]
9.48 0.9151
AT5G67450 C2H2ZnF AZF1 zinc-finger protein 1 (.1) Potri.017G091800
[exp]
10.24 0.9207
AT1G01780 LIM PLIM2b PLIM2b, GATA type zinc finger ... Potri.014G080900
[exp]
10.48 0.9255
AT2G01275 RING/FYVE/PHD zinc finger supe... Potri.004G093500
[exp]
12.96 0.9267

Potri.009G024700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.