Plant FIBer expression Database

Potri.009G025001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G056200
[exp]
56 / 6e-10 AT5G07980 252 / 8e-68 dentin sialophosphoprotein-related (.1)
Potri.012G066600
[exp]
51 / 4e-08 AT5G07980 277 / 2e-75 dentin sialophosphoprotein-related (.1)
Potri.015G056400
[exp]
46 / 2e-06 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G025001.1 pacid=42771492 polypeptide=Potri.009G025001.1.p locus=Potri.009G025001 ID=Potri.009G025001.1.v4.1 annot-version=v4.1
ATGGATCTTATGGTGTACAAAGGATTACTTGCCATTACCGTATACTTTGAGAGAGAATCAGCTAGTACTTTCACTTTTGAGTTATGGACAATGAGTGGAC
ACGGTCATTCATATGCAGAAACCTCTTTGAATCTATTGGGAATTTGGAATGATAAAGAAATAATGGTGCTCAACAGAAATGGATCTTGGATTTCTTTTGT
ATATTACGGAGGTGGTAGAAACAAAAATATTCCCACAGGCCGTTTGACTTTTTTTTTTTCCAGCAGCTCCCATCAGCTTACTTGGTTCCATCTTCTGGAA
ACTGCTGAGTATGTTTATGAGGAGGGACAGAATGCAACCTCTCCCTGTGTTTATGTGAAGACGCAGACTCTGAGCTACTATCAGCCTCATCTATCTTGTT
GTTAG
AA sequence
>Potri.009G025001.1 pacid=42771492 polypeptide=Potri.009G025001.1.p locus=Potri.009G025001 ID=Potri.009G025001.1.v4.1 annot-version=v4.1
MDLMVYKGLLAITVYFERESASTFTFELWTMSGHGHSYAETSLNLLGIWNDKEIMVLNRNGSWISFVYYGGGRNKNIPTGRLTFFFSSSSHQLTWFHLLE
TAEYVYEEGQNATSPCVYVKTQTLSYYQPHLSCC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G025001
[exp]
0 1
AT1G51510 Y14 RNA-binding (RRM/RBD/RNP motif... Potri.006G048300
[exp]
2.44 0.8893
Potri.002G066300
[exp]
3.46 0.8860
Potri.002G048450
[exp]
4.24 0.8999
AT1G02810 Plant invertase/pectin methyle... Potri.002G202600
[exp]
7.74 0.8477
AT5G10160 Thioesterase superfamily prote... Potri.001G209900
[exp]
8.83 0.8467
Potri.003G179301
[exp]
11.22 0.8403
AT5G25757 RNA polymerase I-associated fa... Potri.018G038500
[exp]
16.58 0.8830
Potri.011G073216
[exp]
20.59 0.8654
AT5G48670 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) Potri.006G201700
[exp]
30.00 0.7542
AT4G36220 CYP84A1, FAH1, ... ferulic acid 5-hydroxylase 1 (... Potri.009G123600
[exp]
32.03 0.7957 /F5H2,Pt-IFS1.57

Potri.009G025001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.