Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44260 746 / 0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT2G44230 672 / 0 Plant protein of unknown function (DUF946) (.1) AT3G01870 604 / 0 Plant protein of unknown function (DUF946) (.1) AT3G01880 590 / 0 Plant protein of unknown function (DUF946) (.1) AT5G43950 515 / 3e-178 Plant protein of unknown function (DUF946) (.1) AT3G04350 510 / 2e-176 Plant protein of unknown function (DUF946) (.1) AT5G18490 507 / 2e-175 Plant protein of unknown function (DUF946) (.1) AT1G04090 503 / 2e-173 Plant protein of unknown function (DUF946) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232500 [exp] 1009 / 0 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.018G087400 [exp] 869 / 0 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.013G048300 [exp] 509 / 4e-176 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.014G193100 [exp] 495 / 2e-170 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.002G256802 [exp] 147 / 6e-41 AT3G04350 210 / 1e-64 Plant protein of unknown function (DUF946) (.1) Potri.001G148800 [exp] 53 / 6e-07 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Potri.008G100600 [exp] 44 / 0.0006 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033542 [exp] 625 / 0 AT2G44260 585 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017580 [exp] 620 / 0 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 612 / 0 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017579 [exp] 590 / 0 AT2G44260 553 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10000813 [exp] 527 / 0 AT3G04350 761 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10027952 [exp] 514 / 5e-178 AT3G04350 754 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10024955 [exp] 503 / 6e-174 AT5G43950 696 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10022871 [exp] 497 / 2e-171 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10003007 [exp] 52 / 1e-06 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10011036 [exp] 51 / 3e-06 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [poplar] [flax] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Potri.009G025102.1 pacid=42771305 polypeptide=Potri.009G025102.1.p locus=Potri.009G025102 ID=Potri.009G025102.1.v4.1 annot-version=v4.1 ATGGGGAACTGTCTTTCCTCCACTCAATCTGCAGTAAATCCTAATGTTATCTCCAAGAAACGGAAAACATTGCCCATTGATGCCTCTTTCAAGCTTCCCG CTCCATTACCATCTTGGCCACCAGGTGAAGGTTTTGGCAGTGGAATTATTGATCTTGGAGATGGATTACAAGTGTGCCTGTTATCATCTTTCAACAAAGT TTGGGCCACACATGAAGGAGGGCCAGATAATCTCGGAGCTTCCTTCTTTGAACCCTCACAATTTCCACAAGGTTTCTCTATGCTTGGTTCCTACAGCCAA CCCAACAACACGTTGCTACATGGATGGGTTCTTGCAGGGAGAGACGACACAGGCTCAGCATTGAAGCAACCGATTGATTATACTCTTGTTTGGAGCAGCG ATTCTTTGCGAATCAAGCAAGACGGCGTTGGCTACATTTGGCTACCTACTCCGCCTGATGGTTACAAAGCTGTAGGCCATGTCGTCACCAACTCCCCTCA GAAGCCTCCTCTTGGAAAAATCCACTGTGTCAGGTCTGACCTCACCGACCAATGCGAGTTTGACTCGTGGATATGGGGACTTGGTAAGGAGAGCGATCCA AATGGTTTCAATGTTTATAGTCTGCTGCCTAGTAATAGAGGAACGCAAGCCATGGGTGTCTGTGTAGGGACATTTGTAGCCCAAAATACTTTCACTGCTC CTGTTTCTCTGGCTTGTGTGAAAAATGTGGTGTCCAATCTATCTTGTATGCCTAATCGAAACCAAATTCAAACGATCTTTCAGGCATATTCTCCTTGGAT GTATTTTCATCCTGATGAACAATACCTTCCTTCTTCAGTGAATTGGTATCTTAAAAACGGGGCATTGCTATATAAAAAGGGGGACGAATCCAAACCTGTG CCAATCGAATCCAATGGCTCGAAACTTCCCCAAGGTGGTGCAGATGATGATACTTATTGGATGGATCTTCCTCTGGACGAAGGGGCCAAAGAGAGGGTAA AGAAAGGAAATCTACAAGATTCCCAAGTCTATTTACACATAAAGCCAATGCTCGGAGCCACATTCACTGATATAGCTGTGTGGGTGTTCTACCCTTTCAA TGGTCCTTCAAAGGCTAAAGTTGAATTTATAAATATTCCATTGGGAAAGATAGGAGAACATGTTGGTGATTGGGAGCATGTGACATTGAGGATCAGCAAT TTTAATGGAGAGTTATGGAGCGTCTATTTTTCGGAACACAGTGGGGGAACATGGGTGAAGGCTTCAGAACTTGAGTTTCAAAATGGCAACAAAGCTGTGA CCTATTCATCCCTACACGGCCATGCCATGTATGCCAAGCCAGGTCTAGTTTTACAAGGGAGTGGAGGCATAGGAATTAGGAATGATACTGCTAAAAGCAA GAAATTGATGGATACAGGAGCAAATTCCTTAGTGGTGGCAGCTGAGTATCTGGGCACAGACATTAATGAACCACCATGGCTCAACTATTTCAGGAAATGG GGTCCAAAAGTTACGTACGACATCTCGGAAGAGATCAAGAAGGTGGATAAACTATTGCCCGGAAAACTAAAATCTGCTTTCGACAAGTTTATCAGGAGTC TACCAAATGAAGTGCTCGGGGAACAAGGACCAACAGGCCCCAAAATGAAAAGAAATTGGATTGGAGATGAAGTTTGA
AA sequence Show only first row Show all	>Potri.009G025102.1 pacid=42771305 polypeptide=Potri.009G025102.1.p locus=Potri.009G025102 ID=Potri.009G025102.1.v4.1 annot-version=v4.1 MGNCLSSTQSAVNPNVISKKRKTLPIDASFKLPAPLPSWPPGEGFGSGIIDLGDGLQVCLLSSFNKVWATHEGGPDNLGASFFEPSQFPQGFSMLGSYSQ PNNTLLHGWVLAGRDDTGSALKQPIDYTLVWSSDSLRIKQDGVGYIWLPTPPDGYKAVGHVVTNSPQKPPLGKIHCVRSDLTDQCEFDSWIWGLGKESDP NGFNVYSLLPSNRGTQAMGVCVGTFVAQNTFTAPVSLACVKNVVSNLSCMPNRNQIQTIFQAYSPWMYFHPDEQYLPSSVNWYLKNGALLYKKGDESKPV PIESNGSKLPQGGADDDTYWMDLPLDEGAKERVKKGNLQDSQVYLHIKPMLGATFTDIAVWVFYPFNGPSKAKVEFINIPLGKIGEHVGDWEHVTLRISN FNGELWSVYFSEHSGGTWVKASELEFQNGNKAVTYSSLHGHAMYAKPGLVLQGSGGIGIRNDTAKSKKLMDTGANSLVVAAEYLGTDINEPPWLNYFRKW GPKVTYDISEEIKKVDKLLPGKLKSAFDKFIRSLPNEVLGEQGPTGPKMKRNWIGDEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44260			Plant protein of unknown funct...		Potri.009G025102 [exp]	0	1
AT2G27480			Calcium-binding EF-hand family...		Potri.004G202200 [exp]	2.64	0.8566
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Potri.015G127900 [exp]	2.82	0.8893
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.005G225800 [exp]	4.00	0.8499
AT5G18980			ARM repeat superfamily protein...		Potri.008G200500 [exp]	4.69	0.8419
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.008G183400 [exp]	4.89	0.8719
AT2G44260			Plant protein of unknown funct...		Potri.001G232500 [exp]	5.19	0.8833
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	6.70	0.8492
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G038100 [exp]	6.70	0.8698
					Potri.006G265801 [exp]	7.74	0.8098
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034600 [exp]	8.00	0.8367

Compare expression of checked genes

Potri.009G025102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.