Plant FIBer expression Database

Potri.009G025400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G45880 417 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT5G19840 56 / 2e-08 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
AT3G20810 53 / 1e-07 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
AT5G06550 44 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G233200
[exp]
605 / 0 AT3G45880 404 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.005G215200
[exp]
59 / 2e-09 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Potri.016G065400
[exp]
41 / 0.001 AT5G06550 711 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035699
[exp]
476 / 2e-169 AT3G45880 461 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10037290
[exp]
195 / 3e-62 AT3G45880 164 / 7e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10000493
[exp]
56 / 3e-08 AT5G19840 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF13621 Cupin_8 Cupin-like domain
Representative CDS sequence
>Potri.009G025400.3 pacid=42772076 polypeptide=Potri.009G025400.3.p locus=Potri.009G025400 ID=Potri.009G025400.3.v4.1 annot-version=v4.1
ATGATGGAGGAGCAAGTAAGAGTACTAGAAGGGCTGTGGGGGGATGTGAGGGAGCTAAGCCTAGGAAACAGAATACAACGGCTAGACTTGGCTCCAACCC
CACTCCAATTCCTAAGAGACTATGTATCACCTAACAAACCTTGCATCATCTCCAATGCCATCTCCCACTGGCCTGCTCTCAGCCTCTGGCCTAACCTTTC
TTACCTTTCTTCCTCCCTTTCTGATTCCACTGTCTCCCTTCACCTCACCCCAGATGGCCGCGCTGATTCCCTTGTTCCCCTAGAAACCCCTAAAAAAGGA
GAAACATGCTTTGCCTCTGCTCACGTGGAGCATGTTCCTTTCCCTTGCGCTCTAGATCTTGTTCTGAATTCTGAAAGAAATAATGTGGTGGGATACTTGC
AGCAGCAGAATGACTGTTTTCAGGAGGAATATTCGGTGTTGGCTTCTGACTGTGATGCGCACATCCCGTGGGCTACTGAGGCACTGGGAGGCTGCCTTCC
GGAGGCAGTGAATCTGTGGATCGGAAACCATTCATCTGAGACTTCATTCCACAAGGACCATTACGAGAATCTGTATGCTGTTGTTTCAGGGGAGAAGCAA
TTCTTGCTACTTCCTCCTACGGACGTGCATCGCATGTACATTCAAGAGTATCCAGCTGCTCAATATTCTTATACCAGTGGCTCTGGAGAGTTCAGATTGG
AGTTGGAGAAGCCGCAGAGATATGTGCCTTGGTGCAGCGTGAATCCTTACCCGCCTCCAGAGACTAAGGAGAATGAGATGTCCAAATTTCCTTTGTATTT
CAATGGTCCGAAGCCCTTTCATTGTACTGTCAAGGCTGGAGAGATTCTCTACTTGCCAAGTATGTGGTTTCATCATGTTCGACAGAGTCCAGATGACAAT
GGATGCACCATTGCCATAAACTATTGGTATGATATGCAGTTCGACATCAAGTATGCTTATTTCAATTTCCTGCAATCAATTCATCATGGGTCGACGTTGA
TGAATTATGATGCAACCAAGTTCACCTTAAGTGATGAATTATGTATTGATGCTAATGAATTGGAAGCAGAGGAAGCCAATCAAGAAGAAGATACTAAAGA
CGAATGA
AA sequence
>Potri.009G025400.3 pacid=42772076 polypeptide=Potri.009G025400.3.p locus=Potri.009G025400 ID=Potri.009G025400.3.v4.1 annot-version=v4.1
MMEEQVRVLEGLWGDVRELSLGNRIQRLDLAPTPLQFLRDYVSPNKPCIISNAISHWPALSLWPNLSYLSSSLSDSTVSLHLTPDGRADSLVPLETPKKG
ETCFASAHVEHVPFPCALDLVLNSERNNVVGYLQQQNDCFQEEYSVLASDCDAHIPWATEALGGCLPEAVNLWIGNHSSETSFHKDHYENLYAVVSGEKQ
FLLLPPTDVHRMYIQEYPAAQYSYTSGSGEFRLELEKPQRYVPWCSVNPYPPPETKENEMSKFPLYFNGPKPFHCTVKAGEILYLPSMWFHHVRQSPDDN
GCTIAINYWYDMQFDIKYAYFNFLQSIHHGSTLMNYDATKFTLSDELCIDANELEAEEANQEEDTKDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G45880 2-oxoglutarate (2OG) and Fe(II... Potri.009G025400
[exp]
0 1
AT4G31980 unknown protein Potri.003G209500
[exp]
2.64 0.8979
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.001G074400
[exp]
3.16 0.8828 ENOD8.2
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Potri.015G019100
[exp]
3.46 0.8817 CNGC.1
AT5G01260 Carbohydrate-binding-like fold... Potri.006G099200
[exp]
3.46 0.8807
AT1G11700 Protein of unknown function, D... Potri.011G003300
[exp]
3.60 0.8624
AT5G58130 ROS3 REPRESSOR OF SILENCING 3, RNA-... Potri.018G151300
[exp]
4.00 0.8742
AT4G23010 ATUTR2, UTR2 UDP-galactose transporter 2 (.... Potri.003G121000
[exp]
5.19 0.8726
AT3G14470 NB-ARC domain-containing disea... Potri.001G379700
[exp]
7.00 0.8742
AT1G66920 Protein kinase superfamily pro... Potri.015G018600
[exp]
9.38 0.8687
AT1G05600 EMB3101 EMBRYO DEFECTIVE 3101, Tetratr... Potri.002G179300
[exp]
9.38 0.8504

Potri.009G025400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.