Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60590 350 / 8e-122 DHBP synthase RibB-like alpha/beta domain (.1.2) AT3G01920 53 / 5e-08 DHBP synthase RibB-like alpha/beta domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330100 [exp] 52 / 2e-07 AT3G01920 430 / 1e-152 DHBP synthase RibB-like alpha/beta domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041302 [exp] 354 / 3e-123 AT5G60590 311 / 2e-106 DHBP synthase RibB-like alpha/beta domain (.1.2) Lus10037409 [exp] 352 / 1e-122 AT5G60590 314 / 7e-108 DHBP synthase RibB-like alpha/beta domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01300 [poplar] [flax] Sua5_yciO_yrdC Telomere recombination
Representative CDS sequence Show only first row Show all	>Potri.009G025500.8 pacid=42772279 polypeptide=Potri.009G025500.8.p locus=Potri.009G025500 ID=Potri.009G025500.8.v4.1 annot-version=v4.1 ATGAACATTCCTGAAAGAATTGCAGTCAGATTGCCACAGCTGGTCTTCCCCTCCTCCTCCGAGGTGGTGCTCTATAATCACAATCGTGTCCCAAAGTTGG GGTTTGTGCCATTTTTAACACATAAAAGGCATTTAGGGCTGGGGTTTTCAAAGAAAATGAGTTCGAGCATGGAGAATTGTCATGTTGATGTTCAAAATAA GTTGGAGGTGGTTCGGCCTGCCACGGAAGTTTATGCCCAAGAAGCAATTGAAGCTCTCAAAGCTGGGAAGGTGATTGCAGTACCCACAGATACACTGTAT GGATTTGCTTGTGATGCTTGTTCTTTGGAAGCAGTCAATAGAATTTATGAAATGAAAGGACGTAAGCATACAAGTCCTCTTGCAATCTGTGTTGGGGATG TGTCACAAATACAACACTTCGCGGTCACTGAATATCTGCCTCATGGCTTACTTGATTCTCTACTTCCGGGGCCTGTTACTGTTATATTGAGGCGAGGGGA GTCGAGCGCACTTGAGAAATCCTTGAACCCAGGATTGGATAGTGTGGGAGTCCGTGTACCAGATTGTAACTTCATCAGGGTAGTTGCTCGTGGTCTGGGA AAAGCAGTTGCCCTTACAAGCGCAAACCTTAGTGGGCAGCCCAGTAGCCTTTGCATCAAGGATTTTGAGAACCTCTGGAACCGTTGTGCGTATGTTTATG ACGGTGGTGTACTTCCATCCAATCGTGCAGGATCAACAATTGTGGACCTCACCAGGCCAGGAAAGTACAAGATTCTTAGACCTGGAAGCGCTAAGGAAGA GACTCTGGCAATCCTTGAAAAACATTCTCTGGTCGAGGAAGCTCCGGCGATTTGA
AA sequence Show only first row Show all	>Potri.009G025500.8 pacid=42772279 polypeptide=Potri.009G025500.8.p locus=Potri.009G025500 ID=Potri.009G025500.8.v4.1 annot-version=v4.1 MNIPERIAVRLPQLVFPSSSEVVLYNHNRVPKLGFVPFLTHKRHLGLGFSKKMSSSMENCHVDVQNKLEVVRPATEVYAQEAIEALKAGKVIAVPTDTLY GFACDACSLEAVNRIYEMKGRKHTSPLAICVGDVSQIQHFAVTEYLPHGLLDSLLPGPVTVILRRGESSALEKSLNPGLDSVGVRVPDCNFIRVVARGLG KAVALTSANLSGQPSSLCIKDFENLWNRCAYVYDGGVLPSNRAGSTIVDLTRPGKYKILRPGSAKEETLAILEKHSLVEEAPAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60590			DHBP synthase RibB-like alpha/...		Potri.009G025500 [exp]	0	1
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Potri.009G012700 [exp]	3.46	0.9142
AT3G44020			thylakoid lumenal P17.1 protei...		Potri.009G155700 [exp]	20.88	0.9170
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.012G120492 [exp]	29.32	0.9137
AT5G59030		COPT1	copper transporter 1 (.1)		Potri.009G038800 [exp]	30.21	0.9076	COPT1.2
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.001G390800 [exp]	32.17	0.9101
AT4G22720			Actin-like ATPase superfamily ...		Potri.017G029200 [exp]	33.40	0.9084
AT1G29070			Ribosomal protein L34 (.1)		Potri.011G064800 [exp]	41.74	0.9088
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Potri.007G098700 [exp]	44.49	0.8996
AT2G23200			Protein kinase superfamily pro...		Potri.005G143200 [exp]	44.59	0.8658
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Potri.006G034300 [exp]	46.86	0.9071

Compare expression of checked genes

Potri.009G025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.