Plant FIBer expression Database

Potri.009G025800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59980 419 / 3e-138 Polymerase/histidinol phosphatase-like (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G233550
[exp]
76 / 7e-17 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028138
[exp]
509 / 3e-172 AT5G59980 407 / 1e-134 Polymerase/histidinol phosphatase-like (.1.2)
Lus10042842
[exp]
280 / 2e-87 AT5G59980 217 / 4e-65 Polymerase/histidinol phosphatase-like (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0034 Amidohydrolase PF01876 RNase_P_p30 RNase P subunit p30
Representative CDS sequence
>Potri.009G025800.1 pacid=42771230 polypeptide=Potri.009G025800.1.p locus=Potri.009G025800 ID=Potri.009G025800.1.v4.1 annot-version=v4.1
ATGGGGGGATTCTTCGACCTCAACATACCCCAAGACACCACGAAAACTACACGCATAAAACTTGTTGTGAAAGCTATGGAGCTAGGATACAGTGGCATCG
CATACAACCGGAGCATCAAAGGTATCATGTCTGATCACGACCGTTGCACAATCCCACTCCTGTCCCTTTCCTCTTTACTCGATGTAGCTCCTGCCCTTGC
CTTCTCCGTTAATCTCCACCGTGACCTCCTCGGAATCCCACGCTCCTCCCCTTTCCGTCAGTACACGCGCTTGACTGTCTCTGTTGATACTCCTTCTCAG
GCCCAGGTGCTTAACTCTGGGAATCCTGTTTTGAAGACTTACGATTTTGTTGCTGTCAAGCCTCTGAGTCAAACTGCTTTTGATCACGCCTGTCTTAAAT
CCGAGGTGGATATGATTGCCATTGATTTCTCTGTGAAGCTACCGTTCCGGTTGAAGCTACCTATGGTTAAAGCGGCAATAGAGCGTGGAGTTTATTTCGA
AATTACTTATTCTGATCTTATTGCTGATATTCAAGTGAGGAGACAAATGATACCCAATGCGAAGTTACTAGTGGATTGGACTCGTGGAAAGAATCTCATT
TTCACAAGTGCTGCTTCTTCTGTGAATGATTTTAGAGGGCCCTACGATGTTGCTAATTTTTCATCTTTGTTTGGTCTTTCAATGGAACGAGCTAAAACAG
CTATTTCAAAAAATTGTAGGAGTCTGATAGCAAATGCTTTAAGGAAAAAACACTTTTACAAAGAAGCTATCAGAATCGAACCAATATCATCTGATGAAAT
ATCTGACACAAAGGAACTTATTTATGTGAACTGGCTGAAATGGGATCCAATCTCCAGTGGTGGAGGGGATTTACAACTGGGTGATATAGAAAAGTCTTTT
TCTGCCACCACTAGAGTATCCACAACTGCAAAAGCAATTGATTTTTCTGAGGTTTTAAACGGCATGGCATCAAATGGTGCAAGTTTTTCAACTACTATTC
CGGCAATTGAGACACCAGTTGCAATTAGTGGAGTATCTGAAAAGCCTGGTGAATTTGATTTTCTTCTTGAAACTGATCAGGCTTCATCAGACAATACTTC
AGTGAAGAACCAAACTTCGAGCAATGAAAATTCTCAAGAAATGAATTTACCAAATGATGATACGAGGGCTTTCACCAAGTTCGAGGGAAGTAGAAGCCAT
GTGAGTACCATCAAGGAAGAATCCAAGAATTCAAACATATCAGATGTTATTCTTCCTTCAATAGTGGATGAAAGGCATGATATGCAATCACAAAAATGCA
TCCCTAGTTGTGAAATAAATGCTGTGTTATCTAATGCGAGTGTGATGAATCTGACATCTGCCACGGACATTAATAATACTACTTGTGTTGCTAATGCTAA
AATAGATACTTCATGTGAGAATGCTAATTTTCTTGCTCCTCTGATTGAGAACCCCTCAAGTTTGAAAGGTTCTGATTTAGTTTTATGTCCACAAGATGTT
TCTTTGAGTGAAAATTTAATGGAGATGGATGTTAAAGATCAAGAAGATATTCCAGTGACTGAAAAAGTTTCAAGCAGTGATCAGCTGGGAGAGTCTCAAA
GTGATTTGATTACTATTGTAGATTATATCCCTCTTCTTGCCACTGATGACACAAACATTGAAAACTACCCTTTGGTTGCCAATAACCTGGAAGTTATGAT
GGATGAAGATGATACATATGTGACCAATAATGTTATGGGTAGAGCACAACTTGAGGAATCTGGGGATGAACCAATTGCACCTGTGGATCATATTCCACTT
TCTGTAACCTCTGATGGCATGATTGTTAAAGATGTCCCTTCAGTTGCAAGTAGTGAGAACCTGGAGAAGCTAGCTGTGGAGGGGCAAGAGCATGTAGATG
CTGATTCTAGATGTATTCTTGTCGTGGACGATGATTTGAAAGTTAAAGATAACTCTCCTGCTGAAACTTGTATGTCTCTGGAGGAAGTGGGAATGACAAG
GCAAATGCATGAAGAAGCTAATGTTGAAAGTAAACATACAGCATTGGCTACATTTCAATCAGGGAAATTTAAAGCAAAGCGGAGGACATCCCATCAACAT
CCTTCATTTCCTCTGAAGCGTTTGTTGAATCCCATGGCTTTCAAGAGAACTAAAAAATTTAAGCGGAAGGTGTGA
AA sequence
>Potri.009G025800.1 pacid=42771230 polypeptide=Potri.009G025800.1.p locus=Potri.009G025800 ID=Potri.009G025800.1.v4.1 annot-version=v4.1
MGGFFDLNIPQDTTKTTRIKLVVKAMELGYSGIAYNRSIKGIMSDHDRCTIPLLSLSSLLDVAPALAFSVNLHRDLLGIPRSSPFRQYTRLTVSVDTPSQ
AQVLNSGNPVLKTYDFVAVKPLSQTAFDHACLKSEVDMIAIDFSVKLPFRLKLPMVKAAIERGVYFEITYSDLIADIQVRRQMIPNAKLLVDWTRGKNLI
FTSAASSVNDFRGPYDVANFSSLFGLSMERAKTAISKNCRSLIANALRKKHFYKEAIRIEPISSDEISDTKELIYVNWLKWDPISSGGGDLQLGDIEKSF
SATTRVSTTAKAIDFSEVLNGMASNGASFSTTIPAIETPVAISGVSEKPGEFDFLLETDQASSDNTSVKNQTSSNENSQEMNLPNDDTRAFTKFEGSRSH
VSTIKEESKNSNISDVILPSIVDERHDMQSQKCIPSCEINAVLSNASVMNLTSATDINNTTCVANAKIDTSCENANFLAPLIENPSSLKGSDLVLCPQDV
SLSENLMEMDVKDQEDIPVTEKVSSSDQLGESQSDLITIVDYIPLLATDDTNIENYPLVANNLEVMMDEDDTYVTNNVMGRAQLEESGDEPIAPVDHIPL
SVTSDGMIVKDVPSVASSENLEKLAVEGQEHVDADSRCILVVDDDLKVKDNSPAETCMSLEEVGMTRQMHEEANVESKHTALATFQSGKFKAKRRTSHQH
PSFPLKRLLNPMAFKRTKKFKRKV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G59980 Polymerase/histidinol phosphat... Potri.009G025800
[exp]
0 1
AT2G40360 Transducin/WD40 repeat-like su... Potri.003G009600
[exp]
1.00 0.9222
AT5G26760 unknown protein Potri.015G010900
[exp]
2.00 0.8885
AT5G07900 Mitochondrial transcription te... Potri.001G029400
[exp]
2.44 0.8877
AT1G16280 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis tha... Potri.008G084700
[exp]
3.46 0.8817
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.001G173500
[exp]
8.77 0.8646
AT3G10530 Transducin/WD40 repeat-like su... Potri.008G029100
[exp]
10.09 0.8648
AT3G55200 AtSAP130a Arabidopsis thaliana spliceoso... Potri.008G048900
[exp]
12.08 0.8147
AT5G40520 unknown protein Potri.017G018300
[exp]
12.44 0.8310
AT3G22330 ATRH53, PMH2 putative mitochondrial RNA hel... Potri.006G024100
[exp]
14.66 0.8788
Potri.017G120050
[exp]
15.62 0.7994

Potri.009G025800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.