Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25300 410 / 4e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17020 396 / 6e-138 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 389 / 4e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 389 / 7e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 380 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 272 / 4e-89 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 243 / 1e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 241 / 7e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 232 / 6e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 221 / 2e-69 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382400 [exp] 447 / 6e-158 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 430 / 3e-151 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355100 [exp] 428 / 2e-150 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G355200 [exp] 353 / 1e-120 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 300 / 4e-100 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 289 / 2e-95 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 275 / 5e-90 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 272 / 5e-89 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 249 / 6e-80 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011985 [exp] 513 / 0 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10026173 [exp] 396 / 2e-137 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 393 / 2e-136 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032574 [exp] 387 / 7e-134 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011980 [exp] 377 / 3e-130 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011981 [exp] 371 / 1e-127 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10015252 [exp] 369 / 4e-127 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 352 / 2e-120 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10030995 [exp] 325 / 2e-109 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10030934 [exp] 322 / 2e-108 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.009G025900.1 pacid=42771276 polypeptide=Potri.009G025900.1.p locus=Potri.009G025900 ID=Potri.009G025900.1.v4.1 annot-version=v4.1 ATGGAGTCATCACTAGAACTAGAAGCAGTGAACTTTGGAAAATCTATAATTATACCTAGCGTTCAAGAGATGGCCAAAGAGTCTATGACCAAGATCCCAC CTCGGTATGAACGACCTGATCAAGATCCTCCAATTATCTCAACCGATGCGTCACTACTACTTTCGTCGATCCCTGTTATCGATCTTGAAAGATTGGCTAT TGAAGATTCCATGGATTCTGAGCTGGACATCTTGCACTCTGCTTGCAGAGAGTGGGGTTTCTTCCAGGTTGTGAACCACAGAGTCAGCAGTACATTGCTG GAAGAATTCAAGATGCAGGTCGAGAATTTCTTCAAACTTCCGTACGAAGACAAGAAGAAGCTGTGGCAGAAACCAGATAATCACGAGGGATTTGGGCAGC TCTTTGTGGTATCAGAGGAGCAGAAGCTAGACTGGTCAGATATGTTCTATGTAACAACCCTTCCTCTTTATCTTAGAATGAATGACCTTTTTGACAAGCT CCCTCCAAACCTCAGAGAGACTCTAGAAACTTACTGTTCAGAAGTTAAAAAGCTAGCCAGTGAAATTTTGGGTCATATGGCAAAAGGTTTAAAGATGGAT GCTGAGGAAATGAAAGAGCTATTCAGTGATGGAGTTCAATCGATTAGAATGAATTACTATCCACCATGTCCTGAGCCAGATAAGGCTATTGGGTTCAGTC CCCATTCTGATGCTGATGCTTTAACAATTCTTTTTCAGCTCAGTGATACTGAAGGACTAGAAATTAGAAAGGAAGGGAGATGGTTTCCTGTTAAACCACT TCCAAATGCTTTTGTTGTCAATGTTGGTGACATTACAGAGATAATTAGCAATGGTGTTTATAGGAGCGTTGAGCATAGGGCAAAAGTGAATTCAGCAAAG GAGAGACTCTCTGTTGCTACATTCTACAGTTCCAACTTAGACTCTGTCTTAGGCCCTGCTCCCAGTCTTCTTGGCAAGCATAATCCTGCAATCTTCCGGA GCGTCCCTACAGAGAAGTATTTCAAGGACTTTTTTTCTCAAAAATTGAATGGCAAGTCATACCTTGAATGCTTGAGAATAGCAGATGGATAA
AA sequence Show only first row Show all	>Potri.009G025900.1 pacid=42771276 polypeptide=Potri.009G025900.1.p locus=Potri.009G025900 ID=Potri.009G025900.1.v4.1 annot-version=v4.1 MESSLELEAVNFGKSIIIPSVQEMAKESMTKIPPRYERPDQDPPIISTDASLLLSSIPVIDLERLAIEDSMDSELDILHSACREWGFFQVVNHRVSSTLL EEFKMQVENFFKLPYEDKKKLWQKPDNHEGFGQLFVVSEEQKLDWSDMFYVTTLPLYLRMNDLFDKLPPNLRETLETYCSEVKKLASEILGHMAKGLKMD AEEMKELFSDGVQSIRMNYYPPCPEPDKAIGFSPHSDADALTILFQLSDTEGLEIRKEGRWFPVKPLPNAFVVNVGDITEIISNGVYRSVEHRAKVNSAK ERLSVATFYSSNLDSVLGPAPSLLGKHNPAIFRSVPTEKYFKDFFSQKLNGKSYLECLRIADG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025900 [exp]	0	1
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.018G008400 [exp]	3.00	0.6423
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Potri.006G005300 [exp]	3.46	0.6666
AT3G19240			Vacuolar import/degradation, V...		Potri.004G141300 [exp]	5.65	0.6593
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G011345 [exp]	7.74	0.6395
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G005500 [exp]	15.23	0.6226
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.001G116500 [exp]	32.29	0.6264	SMO1.2
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G009800 [exp]	46.74	0.5132
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	62.22	0.5894
AT4G34660			SH3 domain-containing protein ...		Potri.001G128800 [exp]	70.88	0.5713
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.011G146600 [exp]	82.99	0.5829	ARRO.1

Compare expression of checked genes

Potri.009G025900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.