Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45830 1059 / 0 unknown protein AT1G02290 122 / 4e-29 unknown protein AT5G13950 72 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233800 [exp] 2226 / 0 AT3G45830 1075 / 0.0 unknown protein Potri.002G184000 [exp] 144 / 3e-35 AT1G02290 231 / 2e-69 unknown protein Potri.014G109600 [exp] 142 / 1e-34 AT1G02290 229 / 3e-68 unknown protein Potri.014G144100 [exp] 67 / 7e-11 AT5G13950 406 / 4e-127 unknown protein Potri.002G237800 [exp] 66 / 2e-10 AT5G13950 556 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036145 [exp] 1202 / 0 AT3G45830 1034 / 0.0 unknown protein Lus10018121 [exp] 951 / 0 AT3G45830 803 / 0.0 unknown protein Lus10018907 [exp] 147 / 5e-37 AT1G02290 210 / 3e-62 unknown protein Lus10028606 [exp] 145 / 4e-36 AT1G02290 206 / 7e-61 unknown protein Lus10031980 [exp] 59 / 4e-08 AT5G13950 438 / 2e-138 unknown protein Lus10035121 [exp] 51 / 6e-06 AT5G13950 292 / 1e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G026100.4 pacid=42771769 polypeptide=Potri.009G026100.4.p locus=Potri.009G026100 ID=Potri.009G026100.4.v4.1 annot-version=v4.1 ATGGCGATTGAGAAGAACAATTTCAAGGTATCTAATAAGTTTGATGCGGAGCTTTCTCCTGATAGTAGGGATACTGCCATGTCCAGTGATGAGGACGAGG ATGAAGATGACCTTCTTCATCAGCAGCGGATTGGGTCTGATGAGGATGAAGAGGATGACGTTGATGTTGAAGAGGGTGACGAAGACGACGAAGAATTCAA CGATGCTGATTCTGGGGCAGGATCTGATGATTTTGACTTGCTAGAATTAGGGGAAACCAGGGCTGAGTTTTGCCAATTCGGGAATTTAACTTGCAGTGTT CCCTTTGAATTGTATGACCTTTCTGGATTGCAGGACATATTGTCTGTTGATGTGTGGAATGATGTTTTAACCGAAGATGATAAATTTAGCCTCACTAAGT ATTTACCTGACGTTGATCAGGACACCTTTATGCGAACCCTCAAAGAGCTTCTTGAGGGTGGGAATTTCCATTTTGGTAGTCCCATCAACAAATTGTTTCA GATGCTCAAGGGGGGGTTGTGTGAACCGAGGGTTGCCCTTTACAGAGATGGTTTGTATTTCTTTCAGCAAAGGCAGCATTACCATCTTTTGAGGAAGCAT CAGAATAGTATGGTTAGTCATTTGTGCCAGATAAGAGATGCTTGGCATGATTGTAAAGGGTATAGCATTGGTGAGAAGCTTAGAGTTTTGAATATCATGA AGAGTCATAAGAGTTTGATGCATGAGAATGCGGAGGGAGAATTGGAGAGTGGCTCATCGGACCAAGGGGAACCAGGTGATAGGTTTTGGGACAGAACGGT TAAGGATAAGAAGAGTGCATCCAAATTTGATCGTACTCCAGCATATCGCGTTGGTTCTGGTTTGGAATTTTCTTCACCAGTCAGTTTGGAAGTGGCAAAG TATGGAAAGCAAAATCCCAGGGGTATACTGAAGTCAGCTGGGTCAAAAGATCCTTCAACTAGAGATGTGCCGGGTCGATTTCCTTCTGTTTATCATGGTT TGGGGATGACTTCAAGTCCGCATGGATCCGCATTGACACTTTCTAGGCAGAATAAGGTTGCTGGGTATGACTCAGGAGATGCACCCAGGCAAAGGGATCA AATGACAACTGAAAAGGATGATGCTGAATATGCGATGTACAGATTGGGTGTCCAACGAGATCGAAATATGGTACTTGGTGGTGATATGGTGAAGTCCAGG GTTCCAAGAGCAGGAAAGAAGCATGATTTCAGAACTACCAGATTAGCTGCTGACAGTTTCATGAATTTGCCATTCTCTTCAAACAATGACTTGCATGCCT ATGGTAGGGACAATAATGCAGGTCCGCTGTCAGAAGCTAAAGTGTTCACATCAAATATTCTCAATAATCGGACCAAGTCCGAGTCTTCCAAAAAGACCAA GTATGCTGAAAATTCTCCGCAATTCACAGTTCCTGATCAGATGAAATATTTGAAAGGCCAAACTCCGCAGCTACCACTGAAAGGTAATCGAGTTGACTTA TCAGATCATGCTGAACCAATTTGCCATAGCAAGAATCAAGGACAGGTTTTCTCTATGGATTCTACATTTAAATCTAATGATTGGAATATGAGAAGTAAGA AATGTAGGACGGGGAGAGAGTCCCCGGATCTTAATTTCAAAGCTCATCGAGCATTGTCGCCGCAGGTGAATGATAGAATTGCGCTGCCTCAGGTGAGAGC AAAACAATCACGGGAGAAGATCAGAGGGCGTGTTATTCAGAATGGAAGACCAGAAAAGAGAGCATTGAAAGCTAACAGAATTTATATAAAAGGTGAAGAA ACAGAATCAGACTCATCTGAACAATTTGATGATGAGGATGATGATGGTAGCAATCCTTTGATGAAAAGCAAGTCAGCTTACCCCACCAGTATCATAGAAG GTTCTCGGTCGTCCTTTTTGAAGCCTAGCTTAGGTGCTAAAAAGGCCTCCTTTATTAAGAAAGATGTGCAGGAGAATGAACTGGCTTTCGATGGAATCGC ACACGTTTCCAAAAAGGTGAGTGGCTTTACTGAGCCTGGGCAAATGCCAAGATACTTGTCAAAAGCTAAACAAATGGGTAAGATGCATGAGACACATAGC TCCAGTGCTAGAGTTTTGGAAGACAGCTCTCTCACTGGCCTGGGTAAACTAAAGGATGATAATGACAGAAACAGAATTCACAGATCTGGCAAGATTGGTC AATTACGGGTGGAATCTGGTGAAAGGTTACACAGGTCCTCATCGAAAGCCTACCCTTCTGACCGAAAGCAGAAAGGGGAAGTCAGCCATGATTTCATTGT TGACGACGAGGATGATTTACTTGAAACACAGTTACTGTCAGATGAAAATGCACTGGTTAGATTGCGAAAGAAAGGACGGAACATGGAAACATATGCTCAT GGTCAAAGTGACCGACCTGAGGCTTTGTTGCTAGGGTGCAACTCAGGGATGAAGAAACGGAAAGCAAAGTACGATGTGATGGACATGGCTGGCAGAGACG AAGATGGTAATAGGCATTCTAACAGTGTTGAGCAGCAAATTGACGACTCCATTTCATTGAAGAAAAAAGGGAAAAGGAAATTGGAAGCTGACGATGTTAT TCCAGACTGGGAAACTCCTGAGGCACCTGTTACAAAAACAGGAGTGGTGGATGTGGAGCTGGAAGCGAAACCTCAGAAAAAGCCATATACACCGATTACA CCAACAGTTCATATTGGCTTCTCATTTTCCATTATACATCTCCTTTCAGCAGTTCGTTTGGCAATGATCACTCCTCTTTCAGAAGATTCCTTAGAGGTTG GCAAACCCACAGCAGAGCTGAACAGAGCACATGAAGGTGACAACAATGGGGTTCTTTCTAATGAGAATGCAGATGTTAATAAATCAGACCCTGCCGCGCA AGTGAAAATGCCTTCTCTTACTGTACAGGAGATTGTTAACCGTGTGAGATCAAACCCTATGGATCCCTGCATTCTTGAGACGCAGGAGCCACTCCAGGAT TTGATCAGAGGAGTTCTCAAGATATTTTCATCAAAAACAGCACCTCTAGGAATAAAGGGCTGGAAAGCACTTGTTTTTTATGACAAATCTACAAAAACTT GGTCCTGGATTGGTCCAGTTTCTCACACTTTGACAGATCATGACACTTTTATTGAAGTGACGTCTCCTGAATATTGGGGCCTTCCTCACAAAAGTTGTGT CAAGTTGGTCGATTCTTTTGCTAATTGGCTGAAAAGCGGGCAAGAGACTCTTCAACAAATTGGAAGTCTTCCTGCACCGCCTCTGTCATTGATGCAATGT AACCTGGATGAGAAAGAGAGGTTCAGGGACTTGAGAGCTCAGAAAAGTCTCAATACTATCAGCCCGAGTTCTGAAGAAGGGAGAGCTTATTTTCGTAGGG AAGAAGTCCTGAGGTATTCGATTCCTGACAGGGCCTTCTCATACACTGCTGCTGATGGTAAAAAATCTATTGTTGCTCCCTTGAGGAGGTGTGGTGGTAA GCCAACTTCAAAAGCTCGAGACCATTTCATGCTGAAGCGTGATCGACCACCTCATGTTACGATTCTTTGTCTTGTGAGAGATGCAGCTGCTAGATTGCCA GGAAGTATTGGCACTAGAGCAGATGTTTGTACTTTGATACGAGACTCTCAGTATACTGTTGAAGACGTGTCTGATGCACAAGTGAATCAAGTTGTCAGTG GAGCCCTGGATCGTTTGCATTATGAGCGTGATCCTTGTGTGCAATTTGATGGAGAAAGGAAATTGTGGGTTTACCTGCACAGAGATCGAGAAGAAGAAGA TTTTGAAGATGATGGTACTTCATCTACTAAGAAATGGAAGAGACAGAAAAAAGACCCTGCTGATCTATCCGATCAAGGAACAGTTACCGTTGCTTTTCAT GGGGCAGGGGATCAATCTGGATTTGATTTGGGCTCTGACCTCAACGCTGAGCCACTAGCTGCTGCTGATGATAAAAGAACAGATCTTGTTTGTAGTGATG TGAGACAGAGTGCGGAAGATACTGTTGACACCACTCATGGGCTCCAGCAAGGCAGCACATATCAGGGTGAATCAATGGTTTGGGAGGCCCTGAGCTTAAA TCCATTGGAAGAGAACAAATTGATATGTCAAGAAGATTCCACAAATGAAGATTTTGATGATGAAACATTTGAGAGAGAAAGGCCAGATGGAATCTTAAGT ACAAGCTTATTATGA
AA sequence Show only first row Show all	>Potri.009G026100.4 pacid=42771769 polypeptide=Potri.009G026100.4.p locus=Potri.009G026100 ID=Potri.009G026100.4.v4.1 annot-version=v4.1 MAIEKNNFKVSNKFDAELSPDSRDTAMSSDEDEDEDDLLHQQRIGSDEDEEDDVDVEEGDEDDEEFNDADSGAGSDDFDLLELGETRAEFCQFGNLTCSV PFELYDLSGLQDILSVDVWNDVLTEDDKFSLTKYLPDVDQDTFMRTLKELLEGGNFHFGSPINKLFQMLKGGLCEPRVALYRDGLYFFQQRQHYHLLRKH QNSMVSHLCQIRDAWHDCKGYSIGEKLRVLNIMKSHKSLMHENAEGELESGSSDQGEPGDRFWDRTVKDKKSASKFDRTPAYRVGSGLEFSSPVSLEVAK YGKQNPRGILKSAGSKDPSTRDVPGRFPSVYHGLGMTSSPHGSALTLSRQNKVAGYDSGDAPRQRDQMTTEKDDAEYAMYRLGVQRDRNMVLGGDMVKSR VPRAGKKHDFRTTRLAADSFMNLPFSSNNDLHAYGRDNNAGPLSEAKVFTSNILNNRTKSESSKKTKYAENSPQFTVPDQMKYLKGQTPQLPLKGNRVDL SDHAEPICHSKNQGQVFSMDSTFKSNDWNMRSKKCRTGRESPDLNFKAHRALSPQVNDRIALPQVRAKQSREKIRGRVIQNGRPEKRALKANRIYIKGEE TESDSSEQFDDEDDDGSNPLMKSKSAYPTSIIEGSRSSFLKPSLGAKKASFIKKDVQENELAFDGIAHVSKKVSGFTEPGQMPRYLSKAKQMGKMHETHS SSARVLEDSSLTGLGKLKDDNDRNRIHRSGKIGQLRVESGERLHRSSSKAYPSDRKQKGEVSHDFIVDDEDDLLETQLLSDENALVRLRKKGRNMETYAH GQSDRPEALLLGCNSGMKKRKAKYDVMDMAGRDEDGNRHSNSVEQQIDDSISLKKKGKRKLEADDVIPDWETPEAPVTKTGVVDVELEAKPQKKPYTPIT PTVHIGFSFSIIHLLSAVRLAMITPLSEDSLEVGKPTAELNRAHEGDNNGVLSNENADVNKSDPAAQVKMPSLTVQEIVNRVRSNPMDPCILETQEPLQD LIRGVLKIFSSKTAPLGIKGWKALVFYDKSTKTWSWIGPVSHTLTDHDTFIEVTSPEYWGLPHKSCVKLVDSFANWLKSGQETLQQIGSLPAPPLSLMQC NLDEKERFRDLRAQKSLNTISPSSEEGRAYFRREEVLRYSIPDRAFSYTAADGKKSIVAPLRRCGGKPTSKARDHFMLKRDRPPHVTILCLVRDAAARLP GSIGTRADVCTLIRDSQYTVEDVSDAQVNQVVSGALDRLHYERDPCVQFDGERKLWVYLHRDREEEDFEDDGTSSTKKWKRQKKDPADLSDQGTVTVAFH GAGDQSGFDLGSDLNAEPLAAADDKRTDLVCSDVRQSAEDTVDTTHGLQQGSTYQGESMVWEALSLNPLEENKLICQEDSTNEDFDDETFERERPDGILS TSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45830			unknown protein		Potri.009G026100 [exp]	0	1
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	1.41	0.9292
AT5G61990			Pentatricopeptide repeat (PPR)...		Potri.015G105400 [exp]	3.46	0.9154
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	3.87	0.9207
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	5.19	0.9077
AT3G45830			unknown protein		Potri.001G233800 [exp]	5.29	0.9101
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	5.65	0.9200
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	6.32	0.9172
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	6.92	0.8964
AT3G17740			unknown protein		Potri.015G033300 [exp]	10.00	0.8998
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	10.48	0.8974

Compare expression of checked genes

Potri.009G026100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.