Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45630 812 / 0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G60170 803 / 0 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT2G28540 603 / 0 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT5G62910 65 / 8e-11 RING/U-box superfamily protein (.1) AT3G48070 65 / 9e-11 RING/U-box superfamily protein (.1.2) AT1G74870 63 / 3e-10 RING/U-box superfamily protein (.1) AT1G73530 42 / 0.0008 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132300 [exp] 674 / 0 AT3G45630 437 / 8e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G084700 [exp] 494 / 7e-159 AT2G28540 446 / 1e-141 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G074500 [exp] 60 / 5e-09 AT3G48070 204 / 3e-63 RING/U-box superfamily protein (.1.2) Potri.015G069400 [exp] 59 / 1e-08 AT3G48070 199 / 2e-61 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036138 [exp] 990 / 0 AT5G60170 745 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018126 [exp] 979 / 0 AT3G45630 774 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10036140 [exp] 934 / 0 AT5G60170 491 / 7e-158 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018125 [exp] 895 / 0 AT3G45630 504 / 1e-163 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10042156 [exp] 63 / 5e-10 AT5G62910 218 / 1e-68 RING/U-box superfamily protein (.1) Lus10004246 [exp] 62 / 8e-10 AT5G62910 215 / 2e-67 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0229 [poplar] [flax] RING PF14570 [poplar] [flax] zf-RING_4 RING/Ubox like zinc-binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G026200.2 pacid=42772087 polypeptide=Potri.009G026200.2.p locus=Potri.009G026200 ID=Potri.009G026200.2.v4.1 annot-version=v4.1 ATGAGCGACGAGGGAGAAAGGACTTGCCCACTTTGCGCTGAGGAGATGGATTTAACTGATCAGCAGTTAAAGCCTTGCAAATGTGGTTATGAGATATGTG TTTGGTGCTGGCATCACATAATGGACATGGCGGAGAAGGATGACACAGAAGGGAGGTGTCCAGCATGCCGCCTTCCTTATGACAAGAAGAAGATTGTGGG GACGGCTGGAGACTGCGAGAGATTGGTGGCTGAAATCAATATGGAGCGAAAGAAGTCACATAAGGCAAAGACAAAACCATCTGAAGGAAGGAAGCAACTG AGTAGTGTTAGAGTGATCCAACGGAATCTGGTGTACATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATCTTCTGCAGCACAGAGAGTATTTTGGTC AATACGGGAAGGTTCTAAAAGTCTCTATGTCTCGAACAGCAGCTGGTGTTATTCAACAGTTTCCAAACAATACTTGTAGTGTATATATAACTTACTCCAA GGAGGAAGAAGCTATTCGGTGTATTCAGTCTGTACATGGTTTTATCTTGGATGGTAGATCTTTAAAGGCGTGCTTTGGAACTACAAAGTATTGTCATGCA TGGCTGAGAAATGTGCCTTGCACAAATCCTGATTGTCTATATTTGCACGAGATTGGTTCTCAAGAAGATAGTTTTACAAAAGATGAGATCATATCAGCAT ACACAAGGAGTAGAGTTCAACAAATTACCGGTGCACCAAGCAGTCCGTTGTGGCGTTCAGGGAGTATGTTGCCTCCACCTGCAGATGATTATTGTAACAA TAGTTCTGCTTCTGCAGCAAAACCAGTTGTGAAAAATGCATCAGATAATATAATGAGTAATGACCAAGGTTCACCTCCAACTGGAAGCACTGGTAGATCT ATGGCACTCCCTGCTGCAGCGTCATGGGGAACGCGTGCTTCAAACCAGCCTCAAGCAACAAGCTTGACACAGTCTAATGGACCAATAAGGCTTAAACCAG ACACAGCTAGTGGCATGGTAGCTTTCTCTTCTGCAGTTGCAAGCACAAGTCAGGGTTCTATGTTGCAGAATGATGTGGGTAGAAAGGTTGCATGTGATGA AGAAAGCCAATCTATGAATGGAAAAGGTAAATTAGATTTGAAATCTGCAAAACACCATGTGAGCTTGGATAGCCAAGCCACTGCTCCCGAGAAACCAGTT ATAAACGATGCTACTGCTACTGTAACTTTAAGTAACCAGTCTTCTTGTCCACTGCCATCCATGTACAATGGCTGGGACTCAGATGTGCTGCCAAATATTA CAAAGTCCTTTGATGGAACTCAACAATCTCTTGAATCTGAAAAGGAAGGCTTTGCTATACCTAATGGAAACTTTCAGAACTCATTGCCTGACATCTCTTC AATGAAGGTTGATAGTAATATCAGAAGTGAACTTTCTGGTGTAACTAGAACTAGTTCATTTTCAGATGGGAGTATGATTAAATCACCTGGAAATCAAGGA TTGCAGCCTACATATGCTGAACAATACTGTGAACCTACTCCACTAGCAGCAGAGAGAACTGGTGCATTAGAATATGTGGTTTCTGCTTCAAGTGAACAAT TGGATTGGAGAACAGATCAACCGATGCATGCAATTAGAAGCACTGTTTCTGAAGTAGAGGAGGATATATTAGCGGTTGAGAGACTACGTCTCAAGGACCC AGAGGAAGCGAGCCATGATACTTATTTGCCGAATTCAGCTCATTTACCTCATATACCAAATCATTATAGATCTAGTTCTTTGCAACACACTGAGTCTTTT GGGGCTGCTAGTTTAAATTCGGATTCTCAATATGCAGATACTAGAGTCAGTGATCTTTCACTTCTACATTCATCTAGTAACTGTGTCACATCAAATGGTT ACCCTGAGAAATTAGTCAGCAGTTCTGCTTGTTCAGATAGAAACATAGAGCGCTCATTTTCTCTCTTGAATGGAGTGGAAGGGAAGAACATGGGCAGATC ACTGGGTGATGCTGATAGCAATGGTGCTCTGGATGTGGGTGAGAGCAGCATCATTTCAAATATATTATCACTAGATCTTGATGCCTGGGATAACTCGTTA ACATCACCTCAGAATTTGGCCAAGTTGTTGAGTGAAACAGACAAACAGCCTAGTTCTCTCAAAATGTCAAGTAACTGGAAGGTACAAAATAATAACAACC AGTCTAGATTTTCCTTTGCAAGACAGGAGGAGTTGAGAAGTCAAACACTGGGTGTCGATCCATCTCTTAATGTATTTGGGAAGTTGTCAAATAACTATTC ATCCAACCAGGATTTTGGTGAAAATAGAAATTCATATTCGGAAAAGCTTGGGATTGGTAATAGTTTTTCATCCAGCATTTTTGAAGAACCTGAAAATTTT ACCTTCAGTCCTTCAACTTTCTCTTCTAACAGGCCTCCTATTTCAAGATCTCAAATTTCTGCCCCACCTGGATTCTCTGTGCCAAGCAGAGCACCACCTC CAGGCTTTTCTTCTCACGAAAGAATGGAACAGAGTTTTGACATTATATCTGGGAATCATTTGCTTGACTCATCTTCCTTTCTGAGAAATTCATTTCAGTC ACCACCAACTGGCAATGCTGGTAGTGCTGGAGAAATTGAATTTATGGATCCTGCAATTTTGGCTGTTGGAAAAGGGAGACTTCAGGGCGGGCTTAACAAT CTAGGAGTGGACATGAGATCAAATTTTCCACAACAATTGCATCATTTTGATAACGAGGCAAGACTTCAACTACTAATGCAAAGATCTCTGCCCCCACACC AGAACACAAGATATGCTGACACTGGGGATAGCTTTTCTTCTCTCAATGATTCTTTTGGCATTTCTTCAAGGCTTGTGGATCAATCACAAATCAGTGGTTT ATCCCCTTATGCACAGCTGTCCTTACAGCAATCGAGGAATGGGCTTATGCCAAATGGGCGTTGGGATGGCTGGAATGAGGTTCAGGGTGGCAACAGTTTG CGTATGACAGAGCTTCTCAGGAATGAGAGAGTGGGATTCAATAAGTTTTACACTTCTGGTTATGAGGATTCAAAATTTCGGATGCCCAGCTCAGATGACT TGTATAACAGAACGTTTGAGATGTGA
AA sequence Show only first row Show all	>Potri.009G026200.2 pacid=42772087 polypeptide=Potri.009G026200.2.p locus=Potri.009G026200 ID=Potri.009G026200.2.v4.1 annot-version=v4.1 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRLPYDKKKIVGTAGDCERLVAEINMERKKSHKAKTKPSEGRKQL SSVRVIQRNLVYIVGLPLNLADEDLLQHREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQSVHGFILDGRSLKACFGTTKYCHA WLRNVPCTNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGAPSSPLWRSGSMLPPPADDYCNNSSASAAKPVVKNASDNIMSNDQGSPPTGSTGRS MALPAAASWGTRASNQPQATSLTQSNGPIRLKPDTASGMVAFSSAVASTSQGSMLQNDVGRKVACDEESQSMNGKGKLDLKSAKHHVSLDSQATAPEKPV INDATATVTLSNQSSCPLPSMYNGWDSDVLPNITKSFDGTQQSLESEKEGFAIPNGNFQNSLPDISSMKVDSNIRSELSGVTRTSSFSDGSMIKSPGNQG LQPTYAEQYCEPTPLAAERTGALEYVVSASSEQLDWRTDQPMHAIRSTVSEVEEDILAVERLRLKDPEEASHDTYLPNSAHLPHIPNHYRSSSLQHTESF GAASLNSDSQYADTRVSDLSLLHSSSNCVTSNGYPEKLVSSSACSDRNIERSFSLLNGVEGKNMGRSLGDADSNGALDVGESSIISNILSLDLDAWDNSL TSPQNLAKLLSETDKQPSSLKMSSNWKVQNNNNQSRFSFARQEELRSQTLGVDPSLNVFGKLSNNYSSNQDFGENRNSYSEKLGIGNSFSSSIFEEPENF TFSPSTFSSNRPPISRSQISAPPGFSVPSRAPPPGFSSHERMEQSFDIISGNHLLDSSSFLRNSFQSPPTGNAGSAGEIEFMDPAILAVGKGRLQGGLNN LGVDMRSNFPQQLHHFDNEARLQLLMQRSLPPHQNTRYADTGDSFSSLNDSFGISSRLVDQSQISGLSPYAQLSLQQSRNGLMPNGRWDGWNEVQGGNSL RMTELLRNERVGFNKFYTSGYEDSKFRMPSSDDLYNRTFEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.009G026200 [exp]	0	1
AT5G47940			unknown protein		Potri.001G265100 [exp]	2.23	0.7525
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	2.44	0.7776
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	3.46	0.8234
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	4.00	0.7687
AT1G77600			ARM repeat superfamily protein...		Potri.002G084300 [exp]	6.32	0.7480
AT5G55060			unknown protein		Potri.011G089300 [exp]	6.48	0.7499
AT2G43410		FPA	RNA binding (.1.2.3.4)		Potri.017G026600 [exp]	8.77	0.7383
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127300 [exp]	9.94	0.7729
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G123200 [exp]	14.28	0.6544
					Potri.010G220800 [exp]	14.42	0.7197

Compare expression of checked genes

Potri.009G026200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.