Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07850 638 / 0 Protein of unknown function (DUF604) (.1) AT4G23490 603 / 0 Protein of unknown function (DUF604) (.1) AT4G11350 601 / 0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT5G41460 591 / 0 Protein of unknown function (DUF604) (.1) AT1G01570 516 / 0 Protein of unknown function (DUF604) (.1) AT4G00300 463 / 4e-156 fringe-related protein (.1.2) AT2G37730 392 / 9e-132 Protein of unknown function (DUF604) (.1) AT1G33250 383 / 6e-128 Protein of unknown function (DUF604) (.1) AT4G15240 357 / 2e-118 Protein of unknown function (DUF604) (.1) AT1G05280 337 / 4e-111 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100700 [exp] 622 / 0 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 622 / 0 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 522 / 0 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 401 / 3e-135 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 400 / 6e-135 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 391 / 1e-131 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 383 / 7e-129 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 381 / 3e-127 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 359 / 2e-119 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018123 [exp] 713 / 0 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 614 / 0 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 607 / 0 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 510 / 6e-178 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10008293 [exp] 399 / 2e-134 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 387 / 4e-130 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10024662 [exp] 366 / 2e-125 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 359 / 1e-119 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10033260 [exp] 354 / 8e-119 AT1G33250 546 / 0.0 Protein of unknown function (DUF604) (.1) Lus10033262 [exp] 353 / 2e-118 AT1G33250 544 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.009G026300.1 pacid=42772344 polypeptide=Potri.009G026300.1.p locus=Potri.009G026300 ID=Potri.009G026300.1.v4.1 annot-version=v4.1 ATGTCCTCTGCCCAGCAACGCACGACACAAACTGGAGGCTTCAGAAAAACGATCGCTTGGTTCTTTATCATTGTCGGCACGCTTTACCTCATCTACTCTT CCCATCTTATCCTAAACAACGATCGCCGATGTCTTGCGACCGAAGAAAATCTAGAACATCTTACAAACTTGTCCACATCAATCCAGCTAAATGAACAAGA CAGTAATTTTGAATCTCCTCCTATACTTTCTAAGAAATCACAGGAGTACAACACTGAGCTTAAGCACATTGTTTTCGGGATAGCAGCTTCGGCGGATTTG TGGCAGAAAAGAAAGGAGTACGTAAAGGTGTGGTGGAGGCCGAAGCAGACTAGAGGGATAGTCTGGATGGATAGACAAGTAAGGAGCCCAAGTGATGAAG GGCTGCCTCAGATTAGGATTTCGGCGGACACGTCCAGGTTCAAGTACTCGAATAAGAAAGGACATAGATCGGCCTTGAGGATTTCGAGGGTGGTTTCGGA GACGTTGAGGCTTGGATTGAAGGATGTGAGGTGGTTTGTGATGGGCGATGATGATACAGTGTTTATTGTTGATAATGTGGTCAGGATACTTTCGAAATAT GATCATAGGCAGCTTTATTACGTTGGGAGCTCGTCAGAGAGTCACCTTCAGAATATATATTTCTCTTATTCCATGGCATACGGAGGAGGTGGTTTTGCTA TTAGCCAGCCATTGGCACAAGAGCTGGCAAAGATGCAAGACAGGTGCATTCGGCGGTATCCAGGATTGTATGGCAGTGATGACAGAATCCAAGCTTGCAT GGCTGAGATTGGGGTGCCGCTCTCCAAGGAATCCGGGTTTCATCAGTATGATGTATATGGAGACCTTCTAGGCCTTCTGGCAGCCCATCCTGTAGCTCCG CTGGCTTCACTTCATCATATCGATGTAGTGCAGCCAATATTCCCTGGCATGAGCCGAGCCAGAGCTCTCCAACACTTGTTCAAGTCAGTGCAGCTTGATT CAGCTAGCGTAATGCAACAATCCATCTGCTATGACAAGAATAGGTACTGGTCCATCTCAGTCTCGTGGGGCTATGTTGTTCAAATCTGGAGGGGAGTCGT CTCTCCTAGAGAGCTTGAGACTCCGGCAAGAACCTTTCTTAATTGGTATCGAAAAGCTGATTATACTGCATATACATTTAACACAAGGCCCGTGACGAAG CACCCATGTATGAAGCCCTTCGTTTTTTACATGAGCACTTCTAAATATGATCGAGCTAAGAAGCGAGCGATCGGGGTCTACACTCGCCGTAAATCACCAT CCCCTTATTGCCGGTGGAAAATGGCATCCCCAGAAAGAATTGACTCTATTGTAGTATTGAAGAGGCCGGATACCCTTCGATGGCTCAAGTCACCGAGAAG GGACTGTTGCAGAGTTCTGCCAACAAATAAGGCATCGACGATGTACTTGTGGGTTGGCAATTGCAGAGATGGTGAGATCAGTGAATTCCAGCGACCATAA
AA sequence Show only first row Show all	>Potri.009G026300.1 pacid=42772344 polypeptide=Potri.009G026300.1.p locus=Potri.009G026300 ID=Potri.009G026300.1.v4.1 annot-version=v4.1 MSSAQQRTTQTGGFRKTIAWFFIIVGTLYLIYSSHLILNNDRRCLATEENLEHLTNLSTSIQLNEQDSNFESPPILSKKSQEYNTELKHIVFGIAASADL WQKRKEYVKVWWRPKQTRGIVWMDRQVRSPSDEGLPQIRISADTSRFKYSNKKGHRSALRISRVVSETLRLGLKDVRWFVMGDDDTVFIVDNVVRILSKY DHRQLYYVGSSSESHLQNIYFSYSMAYGGGGFAISQPLAQELAKMQDRCIRRYPGLYGSDDRIQACMAEIGVPLSKESGFHQYDVYGDLLGLLAAHPVAP LASLHHIDVVQPIFPGMSRARALQHLFKSVQLDSASVMQQSICYDKNRYWSISVSWGYVVQIWRGVVSPRELETPARTFLNWYRKADYTAYTFNTRPVTK HPCMKPFVFYMSTSKYDRAKKRAIGVYTRRKSPSPYCRWKMASPERIDSIVVLKRPDTLRWLKSPRRDCCRVLPTNKASTMYLWVGNCRDGEISEFQRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07850			Protein of unknown function (D...		Potri.009G026300 [exp]	0	1
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.010G069100 [exp]	7.14	0.8004
AT4G32330			TPX2 (targeting protein for Xk...		Potri.018G027500 [exp]	7.74	0.8172
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.016G037700 [exp]	10.77	0.7832
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Potri.001G246300 [exp]	12.36	0.7581
					Potri.013G028450 [exp]	27.12	0.7595
AT3G52480			unknown protein		Potri.016G071700 [exp]	34.59	0.7071
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Potri.003G180800 [exp]	38.53	0.6897	GOS11.2
AT3G24030			hydroxyethylthiazole kinase fa...		Potri.001G053900 [exp]	40.37	0.7571
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016700 [exp]	41.42	0.6439
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.001G267300 [exp]	42.04	0.7483

Compare expression of checked genes

Potri.009G026300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.